ZFIN ID: ZDB-GENE-071022-4
Gene Name: PDZ domain containing RING finger 3b
Gene Symbol: pdzrn3b    Nomenclature History

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Previous Name: pdzrn3

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 6 Mapping Details/Browsers
Description: Predicted to have ubiquitin protein ligase activity. Predicted to be involved in neuromuscular junction development and protein ubiquitination. Predicted to localize to cytoplasm and synapse. Is expressed in several structures, including hindbrain neural plate; nervous system; notochord; optic vesicle; and presumptive neural retina. Orthologous to human PDZRN3 (PDZ domain containing ring finger 3).
Genome Resources: Alliance (1),  Gene:100005518 (1),  Ensembl(GRCz11):ENSDARG00000073869 (2)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la015930Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la015931Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa20799 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa40775 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH pdzrn3b HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH pdzrn3b VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process protein ubiquitination (more)
    Cellular Component cell junction (more)
    Molecular Function metal ion binding (more)
    GO Terms (all 9)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA pdzrn3b-201 (1)    Ensembl 4320
    ncRNA pdzrn3b-002 (1) 555
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM pdzrn3b No data available
    MARKER RELATIONSHIPS
    pdzrn3b Contained in: [BAC] CH211-2E18 (1), CH211-207E21 (1), DKEY-237J17 (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001256392 (1) 3162 nt
    Genomic RefSeq:NW_018394664 (1) Blast at MegaBLAST
    Polypeptide UniProtKB:E7FDW2 (1) 1053 aa
    Sequence Information (all 19)
    ORTHOLOGY for pdzrn3b ( Chr: 6 )
    CITATIONS (26)