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General Information
ZIRC
ZFIN ID: ZDB-GENE-070912-707
Gene Name: si:rp71-45g20.10
Gene Symbol: si:rp71-45g20.10
Sequence Ontology ID : SO:0000704

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Previous Name: zgc:173949

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(Including Attributions)
Location: Chr: 9 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have ubiquitin protein ligase activity and zinc ion binding activity. Predicted to be involved in mRNA processing and protein ubiquitination. Orthologous to human RBBP6 (RB binding  ...

Nomenclature Note: This gene is derived from the zebrafish genome sequencing and annotation project. When more is known about the gene, the current nomenclature will be replaced with more traditional zebrafish gene nomenclature. The prefix 'si:' indicates that this gene is represented by annotated genomic sequence from the Sanger Institute.

GENE EXPRESSION No data available
MUTATIONS AND SEQUENCE TARGETING REAGENTSNo data available
PHENOTYPE No data available
DISEASE ASSOCIATED WITH si:rp71-45g20.10 HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH si:rp71-45g20.10 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process mRNA processing (more)
Molecular Function ubiquitin protein ligase activity (more)
GO Terms (all 4)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR014891 (1)
  • InterPro:IPR033489 (1)
  • PROSITE:PS51282 (1)
  • Pfam:PF08783 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA si:rp71-45g20.10-003 (1) 1209
    si:rp71-45g20.10-004 (1) 783
    si:rp71-45g20.10-005 (1) 865
    si:rp71-45g20.10-006 (1) 806
    si:rp71-45g20.10-007 (1) 671
    si:rp71-45g20.10-008 (1) 636
    si:rp71-45g20.10-009 (1) 531
    mRNA si:rp71-45g20.10-201 (1) 1010
    si:rp71-45g20.10-206 (1) 1040
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM si:rp71-45g20.10 No data available
    MARKER RELATIONSHIPS
    si:rp71-45g20.10Contained in: [BAC] RP71-45G20 (1) (order this)
    si:rp71-45g20.10Encodes: [cDNA] MGC:173949 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001105146 (1) 1003bp
    Genomic GenBank:BX511265 (1) 183988bp
    Select Tool
    Polypeptide UniProtKB:A8WHX6 (1) 265aa
    Sequence Clusters UniGene:113810 (1)
    Sequence Information (all 13)
    ORTHOLOGY for si:rp71-45g20.10 (Chr: 9)
    CITATIONS (9)