ZFIN ID: ZDB-GENE-070912-448
Gene Name: stromal antigen 1a
Gene Symbol: stag1a    Nomenclature History

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Previous Names: stag1, si:dkey-223d7.4 (1), wu:fc28h03

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 2 Mapping Details/Browsers
Description: Predicted to have chromatin binding activity. Predicted to be involved in sister chromatid cohesion. Predicted to localize to chromatin; cohesin complex; and nucleus. Human ortholog(s) of this gene implicated in autosomal dominant mental retardation 47. Orthologous to human STAG1 (stromal antigen 1).
Genome Resources: Alliance (1),  Gene:564533 (1),  Ensembl(GRCz11):ENSDARG00000061205 (2)
GENE EXPRESSION
All Expression Data: Fig. 3 from Yao et al., 2017
Wild-type Stages, Structures: Segmentation:26+ somites (22.0h-24.0h) to Pharyngula:Prim-5 (24.0h-30.0h)
 
High Throughput Expression: GEO (1) , Expression Atlas (1)
PHENOTYPE No data available
DISEASE ASSOCIATED WITH stag1a HUMAN ORTHOLOG
Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
autosomal dominant mental retardation 47 Alliance Mental retardation, autosomal dominant 47 617635
DISEASE ASSOCIATED WITH stag1a VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process sister chromatid cohesion (more)
Cellular Component chromatin (more)
Molecular Function chromatin binding (more)
GO Terms (all 5)
PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA stag1a-202 (1)    Ensembl 7677
Browsers: UCSCEnsemblZFIN
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM stag1a No data available
MARKER RELATIONSHIPS
stag1a Contained in: [BAC] DKEY-223D7 (1) (order this)
stag1a Contains: [SNP] rs3727630 (1)
stag1a Encodes: [EST] fc28h03
SEQUENCE INFORMATION
Type Accession # Length (nt/aa) Analysis
RNA RefSeq:NM_001362340 (1)
Genomic GenBank:CR786576 (1) 202469 nt Blast at MegaBLAST
Polypeptide UniProtKB:B0V0X2 (1) 1263 aa
Sequence Information (all 12)
ORTHOLOGY for stag1a ( Chr: 2 )
CITATIONS (21)