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ZIRC
ZFIN ID: ZDB-GENE-070912-212
Gene Name: SATB homeobox 2
Gene Symbol: satb2    Nomenclature History

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Previous Name: si:ch211-223c6.1

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 9 Mapping Details/Browsers
Description: Predicted to have RNA polymerase II regulatory region sequence-specific DNA binding activity. Involved in epiboly involved in gastrulation with mouth forming second. Predicted to localize to the nucleus. Human ortholog(s) of this gene implicated in chromosome 2q32-q33 deletion syndrome. Is expressed in fin; head; nervous system; pharyngeal endoderm; and pronephric duct. Orthologous to human SATB2 (SATB homeobox 2).
Genome Resources: Alliance (1),  Gene:563435 (1),  Ensembl(GRCz11):ENSDARG00000061885 (2)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa7194 Point Mutation Unknown Premature Stop ENU
sa11148 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa31727 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    MO1-satb2 N/A 1
    DISEASE ASSOCIATED WITH satb2 HUMAN ORTHOLOG
    Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
    chromosome 2q32-q33 deletion syndrome Alliance Glass syndrome 612313
    DISEASE ASSOCIATED WITH satb2 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process epiboly involved in gastrulation with mouth forming second (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 6)
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA satb2-201 (1)    Ensembl 2505
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM satb2 No data available
    MARKER RELATIONSHIPS
    satb2 Contained in: [BAC] CH211-165B19 (1) (order this), CH211-223C6 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001128532 (1) 2505 bp
    Genomic GenBank:BX571724 (1) 174709 bp
    Select Tool
    Polypeptide UniProtKB:E1ANH4 (1) 863 aa
    Sequence Clusters UniGene:116489 (1)
    Sequence Information (all 17)
    ORTHOLOGY for satb2 ( Chr: 9 )
    CITATIONS (25)