ZFIN ID: ZDB-GENE-070912-187
Gene Name: sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5Ba
Gene Symbol: sema5ba
Sequence Ontology ID : SO:0000704

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Previous Names: sema5b, si:ch211-208i8.1

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(Including Attributions)
Location: Chr: 9 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have chemorepellent activity and semaphorin receptor binding activity; involved in axonogenesis involved in innervation and sensory perception of touch; predicted to localize to the  ...
GENE EXPRESSION
All Expression Data: Fig. 5 from Leong et al., 2015
Wild-type Stages, Structures: Pharyngula:Prim-5 (24.0h-30.0h) to Pharyngula:Prim-5 (24.0h-30.0h)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa13826 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa14533 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa21542 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa25431 Point Mutation Unknown Splice Site ENU
    sa27445 Point Mutation Unknown Unknown ENU
    sa34702 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH sema5ba HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH sema5ba VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process axonogenesis involved in innervation (more)
    Cellular Component integral component of membrane (more)
    Molecular Function neuropilin binding (more)
    GO Terms (all 7)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000884 (1)
  • InterPro:IPR001627 (1)
  • InterPro:IPR015943 (1)
  • InterPro:IPR016201 (1)
  • InterPro:IPR027231 (1)
  • InterPro:IPR036352 (1)
  • InterPro:IPR036383 (1)
  • PROSITE:PS50092 (1)
  • PROSITE:PS51004 (1)
  • Pfam:PF00090 (1)
  • Pfam:PF01403 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA sema5ba-202 (1) 3116
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM sema5ba No data available
    MARKER RELATIONSHIPS
    sema5baContained in: [BAC] CH211-208I8 (1) (order this), DKEY-217G15 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    Genomic GenBank:BX322793 (1) 192039bp
    Select Tool
    Polypeptide UniProtKB:F1QPQ6 (1) 1101aa
    Sequence Information (all 5)
    OTHER sema5ba GENE PAGES
  • Alliance (1)
  • VEGA:OTTDARG00000025810 (1)
  • Ensembl(GRCz11):ENSDARG00000061471 (2)
  • ORTHOLOGY for sema5ba (Chr: 9)
    CITATIONS (13)