ZFIN ID: ZDB-GENE-070830-1
Gene Name: transient receptor potential cation channel, subfamily C, member 1
Gene Symbol: trpc1
Sequence Ontology ID : SO:0000704

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Location: Chr: 24 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have inositol 1,4,5 trisphosphate binding activity and store-operated calcium channel activity; involved in angiogenesis, filopodium assembly, and vasculogenesis; predicted to localize  ...
GENE EXPRESSION
All Expression Data: 6 figures from 4 publications
Wild-type Stages, Structures: Segmentation:5-9 somites (11.66h-14.0h) to Adult (90d-730d, breeding adult)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa37817 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    PHENOTYPE
    Data: 3 figures from Yu et al., 2010
    Observed in:
    DISEASE ASSOCIATED WITH trpc1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH trpc1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process angiogenesis (more)
    Cellular Component integral component of membrane (more)
    Molecular Function calcium channel activity (more)
    GO Terms (all 14)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR002110 (1)
  • InterPro:IPR002153 (1)
  • InterPro:IPR005457 (1)
  • InterPro:IPR005821 (1)
  • InterPro:IPR013555 (1)
  • InterPro:IPR020683 (1)
  • InterPro:IPR036770 (1)
  • Pfam:PF00520 (1)
  • Pfam:PF08344 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA trpc1-202 (1) 2904
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM trpc1 No data available
    MARKER RELATIONSHIPS
    trpc1Contained in: [BAC] CH211-157J23 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001198661 (1) 2734bp
    Genomic GenBank:BX470196 (1) 165383bp
    Select Tool
    Polypeptide UniProtKB:E1U7G1 (1) 796aa
    Sequence Clusters UniGene:103471 (1)
    Sequence Information (all 12)
    OTHER trpc1 GENE PAGES
  • Alliance (1)
  • Gene:570841 (1)
  • VEGA:OTTDARG00000031754 (1)
  • Ensembl(GRCz11):ENSDARG00000061203 (2)
  • ORTHOLOGY for trpc1 (Chr: 24)
    CITATIONS (21)