ZFIN ID: ZDB-GENE-070822-23
Gene Name: LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated
Gene Symbol: lsm5    Nomenclature History

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Name: zgc:171959

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 12 Mapping Details/Browsers
Description: Predicted to have RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to localize to Lsm1-7-Pat1 complex; U4/U6 x U5 tri-snRNP complex; and U6 snRNP. Orthologous to human LSM5 (LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated).
Genome Resources: Alliance (1),  Gene:563948 (1),  Ensembl(GRCz11):ENSDARG00000071573 (2)
GENE EXPRESSION No data available
MUTATIONS AND SEQUENCE TARGETING REAGENTS No data available
PHENOTYPE No data available
DISEASE ASSOCIATED WITH lsm5 HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH lsm5 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process mRNA processing (more)
Cellular Component nucleus (more)
Molecular Function RNA binding (more)
GO Terms (all 9)
PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA lsm5-201 (1)    Ensembl 739
lsm5-202 (1)    Ensembl 516
lsm5-204 (1)    Ensembl 478
ncRNA lsm5-004 (1)    Ensembl 758
Browsers: UCSCNCBIEnsemblZFIN
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM lsm5 No data available
MARKER RELATIONSHIPS
lsm5 Contained in: [BAC] CH211-198P7 (1)
lsm5 Encodes: [cDNA] MGC:171959 (1)
SEQUENCE INFORMATION
Type Accession # Length (nt/aa) Analysis
RNA RefSeq:NM_001100438 (1) 753 nt
Genomic GenBank:BX571950 (1) 196442 nt
Select Tool
Polypeptide UniProtKB:A7E2L8 (1) 91 aa
Sequence Information (all 12)
ORTHOLOGY for lsm5 ( Chr: 12 )
CITATIONS (15)