ZFIN ID: ZDB-GENE-070705-296
Gene Name: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
Gene Symbol: smarca1    Nomenclature History

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Previous Name: si:dkey-148b12.1 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 5 Mapping Details/Browsers
Description: Predicted to have ATPase activity; DNA binding activity; and transcription factor binding activity. Involved in neural plate anterior/posterior regionalization and primitive erythrocyte differentiation. Predicted to localize to nucleus. Orthologous to human SMARCA1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1).
Genome Resources: Alliance (1),  Gene:559803 (1),  Ensembl(GRCz11):ENSDARG00000012776 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2005 [eu2488]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
High Throughput Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa40402 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    CRISPR1-smarca1
    1
    CRISPR2-smarca1
    1
    MO1-smarca1 N/A 1
    MO2-smarca1 N/A 1
    DISEASE ASSOCIATED WITH smarca1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH smarca1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process neural plate anterior/posterior regionalization (more)
    Cellular Component nucleus (more)
    Molecular Function protein binding (more)
    GO Terms (all 15)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA smarca1-201 (1)    Ensembl 3843
    ncRNA smarca1-002 (1)    Ensembl 770
    smarca1-003 (1)    Ensembl 518
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM smarca1 No data available
    MARKER RELATIONSHIPS
    smarca1 Contained in: [BAC] CH73-149C21 (1), DKEY-148B12 (1) (order this)
    smarca1 Encodes: [EST] eu2488 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001099997 (1)
    Genomic GenBank:CR848717 (1) 207800 nt Blast at MegaBLAST
    Polypeptide UniProtKB:A5WUY4 (1) 1036 aa
    Sequence Information (all 26)
    ORTHOLOGY for smarca1 ( Chr: 5 )
    CITATIONS (19)