ZFIN Gene: si:dkey-119f1.1

ZFIN ID: ZDB-GENE-070705-287

ZFIN ID: ZDB-GENE-070705-287

Gene Name:

si:dkey-119f1.1

Gene Symbol:

si:dkey-119f1.1

Sequence Ontology ID :

SO:0001217

Previous Name:

Location:

Chr: 2 Mapping Details/Browsers

Nomenclature History

AUTOMATED DESCRIPTION

Orthologous to human SMC6 (structural maintenance of chromosomes 6).

Nomenclature Note: This gene is derived from the zebrafish genome sequencing and annotation project. When more is known about the gene, the current nomenclature will be replaced with more traditional zebrafish gene nomenclature. The prefix 'si:' indicates that this gene is represented by annotated genomic sequence from the Sanger Institute.

GENE EXPRESSION No data available

MUTATIONS AND SEQUENCE TARGETING REAGENTS

Allele	Type	Localization	Consequence	Mutagen	Suppliers
sa6006	Point Mutation	Unknown	Premature Stop	ENU
sa14490	Point Mutation	Unknown	Premature Stop	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)
sa19667	Point Mutation	Unknown	Splice Site	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)
sa38310	Point Mutation	Unknown	Premature Stop	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)
sa39763	Point Mutation	Unknown	Premature Stop	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)
sa39764	Point Mutation	Unknown	Premature Stop	ENU	Zebrafish International Resource Center (ZIRC) (order this)

PHENOTYPE No data available

DISEASE ASSOCIATED WITH si:dkey-119f1.1 HUMAN ORTHOLOG No data available

DISEASE ASSOCIATED WITH si:dkey-119f1.1 VIA EXPERIMENTAL MODELS No data available

GENE ONTOLOGY No data available

PROTEIN FAMILIES, DOMAINS AND SITES
InterPro:IPR003395 (1) InterPro:IPR027417 (1)	Pfam:PF02463 (1)

TRANSCRIPTS
Type	Name	Length (bp)	Analysis
mRNA	si:dkey-119f1.1-201 (1)	4267	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

GENE PRODUCT DESCRIPTION No description available

INTERACTIONS AND PATHWAYS

ANTIBODIES No data available

PLASMIDS No data available

CONSTRUCTS WITH SEQUENCES FROM si:dkey-119f1.1 No data available

MARKER RELATIONSHIPS

si:dkey-119f1.1 Contained in:

[BAC] DKEY-119F1 (1) (order this)

SEQUENCE INFORMATION

Type	Accession #	Length (bp/aa)	Analysis
RNA	RefSeq:NM_001128334 (1)	3670 bp	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
Genomic	GenBank:BX927289 (1)	187503 bp	Select Tool MegaBLAST Ensembl
Polypeptide	UniProtKB:A5PN27 (1)	1090 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
Sequence Clusters	UniGene:94251 (1)

Sequence Information (all 10)

OTHER si:dkey-119f1.1 GENE PAGES

Alliance (1)

Gene:557127 (1)

VEGA:OTTDARG00000023699 (1)

Ensembl(GRCz11):ENSDARG00000058719 (2)

ORTHOLOGY for si:dkey-119f1.1 ( Chr: 2 )

CITATIONS (10)

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