ZFIN ID: ZDB-GENE-070705-257
Gene Name: si:ch211-80h18.1
Gene Symbol: si:ch211-80h18.1    Nomenclature History

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Previous Name: si:ct574549.1

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 19 Mapping Details/Browsers
Description: Predicted to localize to integral component of membrane. Is expressed in otolith.
Genome Resources: Alliance (1),  Gene:555593 (1),  Ensembl(GRCz11):ENSDARG00000078522 (2)

Nomenclature Note: This gene is derived from the zebrafish genome sequencing and annotation project. When more is known about the gene, the current nomenclature will be replaced with more traditional zebrafish gene nomenclature. The prefix 'si:' indicates that this gene is represented by annotated genomic sequence from the Sanger Institute.

GENE EXPRESSION
All Expression Data: Table S1 from Kalka et al., 2019
Wild-type Stages, Structures: Adult (90d-730d, breeding adult) to Adult (90d-730d, breeding adult)
 
High Throughput Expression: GEO (1) Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la020793Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa29129 Point Mutation Unknown Splice Site ENU
    sa36756 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa36757 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH si:ch211-80h18.1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH si:ch211-80h18.1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Cellular Component integral component of membrane (more)
    GO Terms (all 2)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA si:ch211-80h18.1-201 (1)    Ensembl 2443
    si:ch211-80h18.1-202 (1)    Ensembl 326
    si:ch211-80h18.1-203 (1)    Ensembl 828
    si:ch211-80h18.1-204 (1)    Ensembl 488
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM si:ch211-80h18.1 No data available
    MARKER RELATIONSHIPS
    si:ch211-80h18.1 Contained in: [BAC] CH211-80H18 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001128332 (1) 2443 nt
    Genomic GenBank:CT574549 (1) 118955 nt
    Select Tool
    Polypeptide UniProtKB:A5WW56 (1) 638 aa
    Sequence Information (all 19)
    ORTHOLOGY for si:ch211-80h18.1 ( Chr: 19 )
    CITATIONS (16)