ZFIN ID: ZDB-GENE-070705-193
Gene Name: si:ch211-71m22.1
Gene Symbol: si:ch211-71m22.1    Nomenclature History

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 2 Mapping Details/Browsers
Description: Predicted to have phospholipid scramblase activity. Involved in cilium assembly. Localizes to cytoplasm. Orthologous to human PLSCR1 (phospholipid scramblase 1); PLSCR2 (phospholipid scramblase 2); and PLSCR5 (phospholipid scramblase family member 5).
Genome Resources: Alliance (1),  Gene:100149582 (1),  Ensembl(GRCz11):ENSDARG00000058638 (2)

Nomenclature Note: This gene is derived from the zebrafish genome sequencing and annotation project. When more is known about the gene, the current nomenclature will be replaced with more traditional zebrafish gene nomenclature. The prefix 'si:' indicates that this gene is represented by annotated genomic sequence from the Sanger Institute.

GENE EXPRESSION
All Expression Data: Fig. S3 from Choksi et al., 2014
Wild-type Stages, Structures: Segmentation:26+ somites (22.0h-24.0h) to Segmentation:26+ somites (22.0h-24.0h)
 
High Throughput Expression: Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la023848Tg Transgenic Insertion Unknown Unknown DNA
Sequence Targeting Reagents
Targeting Reagent Created Alleles Publications
MO1-si:ch211-71m22.1 N/A 1
DISEASE ASSOCIATED WITH si:ch211-71m22.1 HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH si:ch211-71m22.1 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process cilium assembly (more)
Cellular Component cytoplasm (more)
Molecular Function phospholipid scramblase activity (more)
GO Terms (all 6)
PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA si:ch211-71m22.1-201 (1)    Ensembl 1620
Browsers: UCSCNCBIEnsemblZFIN
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM si:ch211-71m22.1 No data available
MARKER RELATIONSHIPS
si:ch211-71m22.1 Contained in: [BAC] CH211-71M22 (1)
SEQUENCE INFORMATION
Type Accession # Length (nt/aa) Analysis
RNA RefSeq:NM_001128395 (1) 1620 nt
Genomic GenBank:CT027589 (1) 113281 nt
Select Tool
Polypeptide UniProtKB:A5WVT4 (1) 263 aa
Sequence Information (all 8)
ORTHOLOGY for si:ch211-71m22.1 ( Chr: 2 )
CITATIONS (18)