ZFIN ID: ZDB-GENE-070702-4
Gene Name: apolipoprotein Ba
Gene Symbol: apoba
Sequence Ontology ID : SO:0000704

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Previous Names: apob (1), im:6911942, wu:fb30e06, zmp:0000000614 (1)

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(Including Attributions)
Location: Chr: 17 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 12 figures from 6 publications
Directly Submitted Expression Data: 5 figures (4 images) from Thisse et al., 2004 [IMAGE:6911942]
Wild-type Stages, Structures: Segmentation:14-19 somites (16.0h-19.0h) to Adult (90d-730d, breeding adult)
  heart, liver, unspecified, whole organism (all 5) expand
Curated Microarray Expression: GEO (1)
PHENOTYPE
Data: Fig. S3 from Avraham-Davidi et al., 2012
Observed in: sprouting angiogenesis, subintestinal vein
DISEASE ASSOCIATED WITH apoba HUMAN ORTHOLOG
Disease Ontology Term OMIM Term OMIM Phenotype ID
familial hypobetalipoproteinemia 1 Hypobetalipoproteinemia 615558
Hypercholesterolemia, due to ligand-defective apo B 144010
GENE ONTOLOGY
Ontology GO Term
Biological Process cholesterol transport (more)
Cellular Component endoplasmic reticulum (more)
Molecular Function lipid transporter activity (more)
GO Terms (all 5)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001747
  • InterPro:IPR009454
  • InterPro:IPR011030
  • InterPro:IPR015255
  • InterPro:IPR015816
  • InterPro:IPR015817
  • InterPro:IPR015818 (1)
  • InterPro:IPR015819
  • PROSITE:PS51211
  • Pfam:PF01347
  • Pfam:PF06448
  • Pfam:PF09172
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA apoba-001 (1) 13486
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM apoba No data available
    MARKER RELATIONSHIPS
    apobaContained in: [BAC] CH211-117G17 (1) (order this)
    apobaEncodes: [EST] fb30e06, fc32g08, IMAGE:6911942 (1) (order this)
    apobaHas Artifact: [EST] fb79f11
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_689735 (1) 13486bp
    Genomic GenBank:BX072551 (1) 164264bp
    Select Tool
    Polypeptide UniProtKB:E7FBD3 4418aa
    Sequence Clusters UniGene:159522 (1)
    Sequence Information (all 23)
    OTHER apoba GENE PAGES
  • Alliance (1)
  • Gene:566465 (1)
  • VEGA:OTTDARG00000038776 (1)
  • Ensembl(GRCz10):ENSDARG00000042780 (1)
  • ORTHOLOGY for apoba (Chr: 17)
    CITATIONS (27)