Gene

lsm8

ID
ZDB-GENE-070629-3
Name
LSM8 homolog, U6 small nuclear RNA associated
Symbol
lsm8 Nomenclature History
Previous Names
None
Type
protein_coding_gene
Location
Chr: 4 Mapping Details/Browsers
Description
Predicted to have RNA binding activity. Involved in RNA splicing; T cell differentiation; and mRNA processing. Predicted to localize to U4/U6 x U5 tri-snRNP complex; U6 snRNP; and precatalytic spliceosome. Is expressed in muscle. Orthologous to human LSM8 (LSM8 homolog, U6 small nuclear RNA associated).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
3 figures from 3 publications
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
3 figures from Iwanami et al., 2016
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With lsm8 Human Ortholog
No data available
Associated With lsm8 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR001163 Sm domain, eukaryotic/archaea-type
Domain IPR034103 Sm-like protein Lsm8
Domain IPR047575 Sm domain
Family IPR044642 U6 snRNA-associated Sm-like protein Lsm1/8
Homologous_superfamily IPR010920 LSM domain superfamily
Domain Details Per Protein
Protein Length LSM domain superfamily Sm domain Sm domain, eukaryotic/archaea-type Sm-like protein Lsm8 U6 snRNA-associated Sm-like protein Lsm1/8
UniProtKB:E7EZ02 96
Transcripts
Genome Browsers
Type Name Annotation Method Length (nt) Analysis
mRNA lsm8-201 (1) Havana 628 nt
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations