ZFIN ID: ZDB-GENE-070314-2
Gene Name: retinoid X receptor, alpha a
Gene Symbol: rxraa

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Previous Names: NR2B1-B (1), RXRalpha-B (1)

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(Including Attributions)
Location: Chr: 21 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 15 figures from 4 publications
Directly Submitted Expression Data: 8 figures (20 images) from Thisse et al., 2008 [dq017629]
Wild-type Stages, Structures: Cleavage:2-cell (0.75h-1.0h) to Adult (90d-730d, breeding adult)
  brain, cranial neural crest, heart, hindbrain (all 19) expand
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la021840Tg Transgenic Insertion Unknown Unknown DNA
la021841Tg Transgenic Insertion Unknown Unknown DNA
la021842Tg Transgenic Insertion Unknown Unknown DNA
la028311Tg Transgenic Insertion Unknown Unknown DNA
la028312Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • xu0419Gt Transgenic Insertion Unknown Unknown DNA
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH rxraa HUMAN ORTHOLOGNo data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process regulation of transcription, DNA-templated (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 10)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000003 (1)
  • InterPro:IPR000536 (1)
  • InterPro:IPR001628 (1)
  • InterPro:IPR001723 (1)
  • InterPro:IPR013088 (1)
  • InterPro:IPR021780 (1)
  • PROSITE:PS00031 (1)
  • PROSITE:PS51030 (1)
  • Pfam:PF00104 (1)
  • Pfam:PF00105 (1)
  • Pfam:PF11825 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA rxraa-001 (1) 1380
    rxraa-002 (1) 878
    ncRNA rxraa-003 (1) 658
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYSNo data available
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM rxraa No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    rxraaContained in: [BAC] CH211-242A9 (1) (order this), DKEY-275N23 (1) (order this)
    rxraaEncodes: [EST] dq017629 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001161551 (1) 1377bp
    Genomic GenBank:BX001031 (1) 192207bp
    Select Tool
    Polypeptide UniProtKB:F1R1Y8 (1) 495aa
    Sequence Clusters UniGene:87467 (1)
    Sequence Information (all 20)
    OTHER rxraa GENE PAGES
  • Gene:555578 (1)
  • VEGA:OTTDARG00000031493 (1)
  • Ensembl(GRCz10):ENSDARG00000057737 (1)
  • ORTHOLOGY for rxraa (Chr: 21)
    CITATIONS (30)