ZFIN ID: ZDB-GENE-070209-83
Gene Name: PAT1 homolog 1, processing body mRNA decay factor
Gene Symbol: patl1
Sequence Ontology ID : SO:0000704

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Previous Names: fa11d04, wu:fa11d04, zgc:158239 (1)

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(Including Attributions)
Location: Chr: 1 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have RNA binding activity; predicted to be involved in cytoplasmic mRNA processing body assembly and deadenylation-dependent decapping of nuclear-transcribed mRNA; predicted to  ...
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:7141267]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa11013 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa18712 Point Mutation Unknown Premature Stop ENU
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH patl1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH patl1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process cytoplasmic mRNA processing body assembly (more)
    Cellular Component COLOCALIZES_WITH CCR4-NOT complex (more)
    Molecular Function RNA binding (more)
    GO Terms (all 9)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR019167 (1)
  • InterPro:IPR039900 (1)
  • Pfam:PF09770 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA patl1-002 (1) 198
    patl1-003 (1) 857
    mRNA patl1-203 (1) 2359
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM patl1 No data available
    MARKER RELATIONSHIPS
    patl1Contained in: [BAC] CH73-251A15 (1) (order this)
    patl1Encodes: [EST] fa11d04, IMAGE:7141267 (1) (order this)
    [cDNA] MGC:158239 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001083028 (1) 2935bp
    Genomic GenBank:CU550733 (1) 55529bp
    Select Tool
    Polypeptide UniProtKB:A2RRV3 (1) 765aa
    Sequence Clusters UniGene:20116 (1)
    Sequence Information (all 17)
    OTHER patl1 GENE PAGES
  • Alliance (1)
  • Gene:100009659 (1)
  • VEGA:OTTDARG00000029957 (1)
  • Ensembl(GRCz11):ENSDARG00000017423 (2)
  • ORTHOLOGY for patl1 (Chr: 1)
    CITATIONS (21)