ZFIN ID: ZDB-GENE-070209-83
Gene Name: PAT1 homolog 1, processing body mRNA decay factor
Gene Symbol: patl1    Nomenclature History

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Previous Names: fa11d04, wu:fa11d04, zgc:158239 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 1 Mapping Details/Browsers
Description: Predicted to have RNA binding activity. Predicted to be involved in cytoplasmic mRNA processing body assembly and deadenylation-dependent decapping of nuclear-transcribed mRNA. Predicted to colocalize with CCR4-NOT complex. Orthologous to human PATL1 (PAT1 homolog 1, processing body mRNA decay factor).
Genome Resources: Alliance (1),  Gene:100009659 (1),  Ensembl(GRCz11):ENSDARG00000017423 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:7141267]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
High Throughput Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa11013 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa18712 Point Mutation Unknown Premature Stop ENU
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH patl1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH patl1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process cytoplasmic mRNA processing body assembly (more)
    Cellular Component COLOCALIZES_WITH   CCR4-NOT complex (more)
    Molecular Function RNA binding (more)
    GO Terms (all 9)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA patl1-203 (1)    Ensembl 2359
    ncRNA patl1-002 (1)    Ensembl 198
    patl1-003 (1)    Ensembl 857
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM patl1 No data available
    MARKER RELATIONSHIPS
    patl1 Contained in: [BAC] CH73-251A15 (1)
    patl1 Encodes: [EST] fa11d04, IMAGE:7141267 (1)
    [cDNA] MGC:158239 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001083028 (1) 2935 nt
    Genomic GenBank:CU550733 (1) 55529 nt
    Select Tool
    Polypeptide UniProtKB:A2RRV3 (1) 765 aa
    Sequence Information (all 16)
    ORTHOLOGY for patl1 ( Chr: 1 )
    CITATIONS (24)