ZFIN ID: ZDB-GENE-070112-652
Gene Name: non-SMC condensin I complex, subunit H
Gene Symbol: ncaph
Sequence Ontology ID : SO:0000704

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Previous Names: si:dkeyp-86b9.4, zgc:158618

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(Including Attributions)
Location: Chr: 5 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have DNA topoisomerase (ATP-hydrolyzing) activator activity, DNA topoisomerase binding activity, and chromatin binding activity; involved in mitotic sister chromatid segregation;  ...
GENE EXPRESSION
All Expression Data: Fig. S2 from Seipold et al., 2009
Wild-type Stages, Structures: Blastula:512-cell (2.75h-3.0h) to Hatching:Long-pec (48.0h-60.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa20434 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa31444 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    PHENOTYPE
    Data: 2 figures from Seipold et al., 2009
    Observed in:
    DISEASE ASSOCIATED WITH ncaph HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    ?Microcephaly 23, primary, autosomal recessive 617985
    DISEASE ASSOCIATED WITH ncaph VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process mitotic sister chromatid segregation (more)
    Cellular Component condensin complex (more)
    Molecular Function chromatin binding (more)
    GO Terms (all 10)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR022816 (1)
  • Pfam:PF05786 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA ncaph-201 (1) 2684
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM ncaph No data available
    MARKER RELATIONSHIPS
    ncaphContained in: [BAC] DKEYP-86B9 (1)
    ncaphEncodes: [cDNA] MGC:158618 (1), MGC:192733 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001080196 (1) 2683bp
    Genomic GenBank:BX323557 (1) 223754bp Blast at MegaBLAST
    Polypeptide UniProtKB:A1L231 (1) 690aa
    Sequence Clusters UniGene:18070 (1)
    Sequence Information (all 17)
    OTHER ncaph GENE PAGES
  • Alliance (1)
  • Gene:570062 (1)
  • VEGA:OTTDARG00000016456 (1)
  • ORTHOLOGY for ncaph (Chr: 5)
    CITATIONS (17)