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General Information
ZIRC
ZFIN ID: ZDB-GENE-061218-1
Gene Name: jumonji, AT rich interactive domain 2a
Gene Symbol: jarid2a    Nomenclature History

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 16 Mapping Details/Browsers
Description: Predicted to have histone demethylase activity. Predicted to be involved in chromatin remodeling. Predicted to localize to the histone methyltransferase complex. Human ortholog(s) of this gene implicated in autistic disorder. Orthologous to human JARID2 (jumonji and AT-rich interaction domain containing 2).
Genome Resources: Alliance (1),  Gene:100007426 (1),  Ensembl(GRCz11):ENSDARG00000060925 (2)
GENE EXPRESSION
All Expression Data: Fig. 5 from Singh et al., 2017
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa16122 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa16781 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa22844 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa30687 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    MO1-jarid2a N/A 1
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH jarid2a HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH jarid2a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process chromatin remodeling (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 6)
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA jarid2a-201 (1)    Ensembl 4493
    Browsers: NCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM jarid2a No data available
    MARKER RELATIONSHIPS
    jarid2a Contained in: [BAC] DKEY-25O19 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_001345849 (1) 4281 bp
    Genomic GenBank:CR391941 (1) 187002 bp
    Select Tool
    Polypeptide UniProtKB:A0A2R8QCF1 (1) 1203 aa
    Sequence Clusters UniGene:103290 (1)
    Sequence Information (all 8)
    ORTHOLOGY for jarid2a ( Chr: 16 )
    CITATIONS (20)