ZFIN ID: ZDB-GENE-061215-102
Gene Name: TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor
Gene Symbol: taf15    Nomenclature History

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Names: fa11g05, wu:fa11g05, wu:fc02g02, zgc:158363

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 15 Mapping Details/Browsers
Description: Predicted to have RNA binding activity and metal ion binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to localize to the nucleus. Human ortholog(s) of this gene implicated in chondrosarcoma and extraskeletal myxoid chondrosarcoma. Orthologous to human TAF15 (TATA-box binding protein associated factor 15).
Genome Resources: Alliance (1),  Gene:558760 (1),  Ensembl(GRCz11):ENSDARG00000070019 (2)
GENE EXPRESSION
Curated Microarray Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la027601Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH taf15 HUMAN ORTHOLOG
    Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
    extraskeletal myxoid chondrosarcoma Alliance Chondrosarcoma, extraskeletal myxoid 612237
    DISEASE ASSOCIATED WITH taf15 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process regulation of transcription, DNA-templated (more)
    Cellular Component nucleus (more)
    Molecular Function metal ion binding (more)
    GO Terms (all 6)
    PROTEIN FAMILIES, DOMAINS AND SITES
    Type InterPro ID Name
    Domain IPR000504 RNA recognition motif domain
    Domain IPR001876 Zinc finger, RanBP2-type
    Family IPR034870 TAF15/EWS/TLS family
    Family IPR034875 TATA binding associated factor 15
    Homologous_superfamily IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
    Homologous_superfamily IPR035979 RNA-binding domain superfamily
    Homologous_superfamily IPR036443 Zinc finger, RanBP2-type superfamily
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA taf15-201 (1)    Ensembl 2083
    taf15-202 (1)    Ensembl 694
    taf15-203 (1)    Ensembl 640
    taf15-206 (1)    Ensembl 913
    ncRNA taf15-004 (1)    Ensembl 404
    taf15-006 (1)    Ensembl 890
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM taf15 No data available
    MARKER RELATIONSHIPS
    taf15 Contained in: [Fosmid] CH1073-408O3 (1), CH1073-457G23 (1)
    taf15 Encodes: [EST] fa11g05, fc02g02, IMAGE:6798356
    [cDNA] MGC:158363 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001079973 (1) 1860 nt
    Genomic GenBank:CU633910 (1) 37830 nt
    Select Tool
    Polypeptide UniProtKB:A1A5X7 (1) 434 aa
    Sequence Information (all 24)
    ORTHOLOGY for taf15 ( Chr: 15 )
    CITATIONS (26)