ZFIN ID: ZDB-GENE-061207-5
Gene Name: si:ch211-13k12.2
Gene Symbol: si:ch211-13k12.2    Nomenclature History

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 18 Mapping Details/Browsers
Description: Predicted to be involved in transcription elongation from RNA polymerase II promoter. Predicted to localize to the transcription elongation factor complex.
Genome Resources: Alliance (1),  Ensembl(GRCz11):ENSDARG00000038121 (2)

Nomenclature Note: This gene is derived from the zebrafish genome sequencing and annotation project. When more is known about the gene, the current nomenclature will be replaced with more traditional zebrafish gene nomenclature. The prefix 'si:' indicates that this gene is represented by annotated genomic sequence from the Sanger Institute.

GENE EXPRESSION No data available
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la027937Tg Transgenic Insertion Unknown Unknown DNA
sa15024 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH si:ch211-13k12.2 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH si:ch211-13k12.2 VIA EXPERIMENTAL MODELS No data available
    PROTEIN FAMILIES, DOMAINS AND SITES
    Type InterPro ID Name
    Domain IPR010844 Occludin homology domain
    Domain IPR019464 RNA polymerase II elongation factor ELL, N-terminal
    Family IPR031176 ELL/occludin family
    Homologous_superfamily IPR036390 Winged helix DNA-binding domain superfamily
    Homologous_superfamily IPR042065 E3 ubiquitin-protein ligase ELL-like
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA si:ch211-13k12.2-202 (1)    Ensembl 563
    si:ch211-13k12.2-203 (1)    Ensembl 923
    ncRNA si:ch211-13k12.2-003 (1)    Ensembl 730
    Browsers: EnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM si:ch211-13k12.2 No data available
    MARKER RELATIONSHIPS
    si:ch211-13k12.2 Contained in: [BAC] CH211-13K12 (1)
    [Fosmid] ZFOS-882G11 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    Genomic GenBank:BX897658 (1) 160335 bp
    Select Tool
    Polypeptide UniProtKB:F1RAF7 (1) 593 aa
    Sequence Information (all 6)
    ORTHOLOGY for si:ch211-13k12.2 ( Chr: 18 )
    CITATIONS (12)