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General Information
ZIRC
ZFIN ID: ZDB-GENE-061111-1
Gene Name: syndecan 4
Gene Symbol: sdc4
Sequence Ontology ID : SO:0000704

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Attributions

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Previous Names: sdc4l, syn4 (1), wu:fc47g09

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(Including Attributions)
Location: Chr: 6 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Exhibits phosphatidylinositol-4,5-bisphosphate binding activity; involved in several processes, including cell adhesion mediated by integrin, cell migration, and epiboly involved in gastrulation with  ...
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
ihb257 Small Deletion Exon 2 Unknown CRISPR
  • China Zebrafish Resource Center (CZRC, ZKO consortium) (order this)
  • la025660Tg Transgenic Insertion Unknown Unknown DNA
    sa20823 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    DISEASE ASSOCIATED WITH sdc4 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH sdc4 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process cell adhesion (more)
    Cellular Component focal adhesion (more)
    Molecular Function phosphatidylinositol-4,5-bisphosphate binding (more)
    GO Terms (all 12)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001050 (1)
  • InterPro:IPR027789 (1)
  • Pfam:PF01034 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA sdc4-201 (1) 2306
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM sdc4 No data available
    MARKER RELATIONSHIPS
    sdc4Contained in: [BAC] CH73-166O16 (1) (order this), CH211-8I17 (1) (order this)
    sdc4Encodes: [EST] fc47g09
    [STS] chunp30591
    [cDNA] MGC:162342 (1) (order this), MGC:174221 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001048149 (1) 944bp
    Genomic GenBank:AL954861 (1) 175026bp
    Select Tool
    Polypeptide UniProtKB:Q08BE1 (1) 258aa
    Sequence Clusters UniGene:74531 (1)
    Sequence Information (all 25)
    ORTHOLOGY for sdc4 (Chr: 6)
    CITATIONS (38)