ZFIN ID: ZDB-GENE-061103-391
Gene Name: CD99 molecule
Gene Symbol: cd99    Nomenclature History

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Previous Names: im:7159661, zgc:153928

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 1 Mapping Details/Browsers
Description: Predicted to be involved in T cell extravasation; homotypic cell-cell adhesion; and positive regulation of neutrophil extravasation. Predicted to localize to integral component of plasma membrane. Is expressed in posterior lateral line primordium. Orthologous to human CD99 (CD99 molecule (Xg blood group)).
Genome Resources: Alliance (1),  Gene:559896 (1),  Ensembl(GRCz11):ENSDARG00000051975 (2)
GENE EXPRESSION
All Expression Data: 2 figures from 2 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:7159661]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
zko625a Indel Unknown Unknown CRISPR
  • China Zebrafish Resource Center (CZRC) (order this)
  • zko625b Indel Unknown Unknown CRISPR
  • China Zebrafish Resource Center (CZRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    CRISPR1-cd99 1
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH cd99 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH cd99 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process homotypic cell-cell adhesion (more)
    Cellular Component integral component of membrane (more)
    Molecular Function molecular_function (more)
    GO Terms (all 7)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA cd99-202 (1)    Ensembl 1819
    cd99-205 (1)    Ensembl 987
    ncRNA cd99-002 (1)    Ensembl 606
    cd99-003 (1)    Ensembl 736
    cd99-005 (1)    Ensembl 835
    cd99-006 (1)    Ensembl 980
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM cd99 No data available
    MARKER RELATIONSHIPS
    cd99 Contained in: [BAC] CH211-233O18 (1), DKEYP-86F8 (1)
    cd99 Encodes: [EST] IMAGE:7159661 (1)
    [cDNA] MGC:153928 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001079980 (1) 1818 nt
    Genomic GenBank:BX322647 (1) 216540 nt Blast at MegaBLAST
    Polypeptide UniProtKB:B8A4U0 (1) 220 aa
    Sequence Information (all 20)
    ORTHOLOGY for cd99 ( Chr: 1 )
    CITATIONS (21)