header logo image header logo text
Downloads Login
Research
General Information
ZIRC
ZFIN ID: ZDB-GENE-061013-522
Gene Name: 5'-nucleotidase, cytosolic IIb
Gene Symbol: nt5c2b    Nomenclature History

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Names: im:7162273, zgc:153651

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 1 Mapping Details/Browsers
Description: Predicted to have 5'-nucleotidase activity. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 45. Orthologous to human NT5C2 (5'-nucleotidase, cytosolic II).
Genome Resources: Alliance (1),  Gene:557972 (1),  Ensembl(GRCz11):ENSDARG00000058231 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:7162273]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la013624Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa12322 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa25609 Point Mutation Unknown Premature Stop ENU
    zko611a Indel Unknown Unknown CRISPR
  • China Zebrafish Resource Center (CZRC) (order this)
  • zko611b Small Deletion Unknown Unknown CRISPR
  • China Zebrafish Resource Center (CZRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    CRISPR1-nt5c2b 1
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH nt5c2b HUMAN ORTHOLOG
    Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
    hereditary spastic paraplegia 45 Alliance Spastic paraplegia 45, autosomal recessive 613162
    DISEASE ASSOCIATED WITH nt5c2b VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Cellular Component cellular_component (more)
    Molecular Function metal ion binding (more)
    GO Terms (all 3)
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA nt5c2b-201 (1)    Ensembl 1982
    ncRNA nt5c2b-002 (1)    Ensembl 2295
    nt5c2b-003 (1)    Ensembl 2148
    nt5c2b-004 (1)    Ensembl 716
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM nt5c2b No data available
    MARKER RELATIONSHIPS
    nt5c2b Contained in: [BAC] CH211-157N19 (1) (order this)
    nt5c2b Encodes: [EST] IMAGE:7162273 (1) (order this)
    [cDNA] MGC:153651 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001079966 (1) 2008 bp
    Genomic GenBank:CR812482 (1) 179573 bp
    Select Tool
    Polypeptide UniProtKB:F1QAK5 (1) 562 aa
    Sequence Clusters UniGene:30646 (1)
    Sequence Information (all 21)
    ORTHOLOGY for nt5c2b ( Chr: 1 )
    CITATIONS (25)