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ZIRC
ZFIN ID: ZDB-GENE-061013-433
Gene Name: polynucleotide kinase 3'-phosphatase
Gene Symbol: pnkp
Sequence Ontology ID : SO:0000704

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Previous Names: fe48d04, wu:fe48d04, zgc:153084

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(Including Attributions)
Location: Chr: 15 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity, double-stranded DNA binding activity, and polynucleotide 3'-phosphatase activity; predicted to be involved in DNA  ...
GENE EXPRESSION
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa35823 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH pnkp HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    microcephaly, seizures, and developmental delay Microcephaly, seizures, and developmental delay 613402
    Ataxia-oculomotor apraxia 4 616267
    DISEASE ASSOCIATED WITH pnkp VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process DNA 3' dephosphorylation involved in DNA repair (more)
    Cellular Component nucleus (more)
    Molecular Function ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity (more)
    GO Terms (all 8)
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA pnkp-003 (1) 871
    mRNA pnkp-201 (1) 2206
    pnkp-204 (1) 683
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM pnkp No data available
    MARKER RELATIONSHIPS
    pnkpContained in: [BAC] DKEY-243K1 (1) (order this)
    pnkpEncodes: [EST] fe48d04
    [cDNA] MGC:153084 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001077578 (1) 2222bp
    Genomic GenBank:CR925813 (1) 48715bp
    Select Tool
    Polypeptide UniProtKB:A0A2R8QSN3 (1) 597aa
    Sequence Clusters UniGene:18508 (1)
    Sequence Information (all 17)
    ORTHOLOGY for pnkp (Chr: 15)
    CITATIONS (13)