ZFIN ID: ZDB-GENE-060929-708
Gene Name: calmegin
Gene Symbol: clgn
Sequence Ontology ID : SO:0000704

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Names: canx, fj49d10, wu:fj24b04, wu:fj49d10, zgc:153946

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Location: Chr: 1 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have calcium ion binding activity and unfolded protein binding activity; predicted to be involved in protein folding; predicted to localize to the endoplasmic reticulum and integral  ...
GENE EXPRESSION
Directly Submitted Expression Data: 5 figures (5 images) from Thisse et al., 2004 [IMAGE:7149375]
Wild-type Stages, Structures: Segmentation:14-19 somites (16.0h-19.0h) to Hatching:Long-pec (48.0h-60.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la028148Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa17985 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • zko762b Small Deletion Unknown Unknown CRISPR
  • China Zebrafish Resource Center (CZRC, ZKO consortium) (order this)
  • Targeting reagents:
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH clgn HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH clgn VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process protein folding (more)
    Cellular Component endoplasmic reticulum (more)
    Molecular Function calcium ion binding (more)
    GO Terms (all 6)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001580 (1)
  • InterPro:IPR009033 (1)
  • InterPro:IPR013320 (1)
  • InterPro:IPR018124 (1)
  • PROSITE:PS00803 (1)
  • PROSITE:PS00804 (1)
  • PROSITE:PS00805 (1)
  • Pfam:PF00262 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA clgn-001 (1) 2956
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM clgn No data available
    MARKER RELATIONSHIPS
    clgnContained in: [BAC] DKEY-27F16 (1) (order this)
    clgnEncodes: [EST] fj24b04, fj49d10, IMAGE:7149375 (1) (order this)
    [cDNA] MGC:153946 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001077541 (1) 2912bp
    Genomic GenBank:BX511216 (1) 169841bp
    Select Tool
    Polypeptide UniProtKB:Q08BY9 (1) 630aa
    Sequence Clusters UniGene:80864 (1)
    Sequence Information (all 16)
    OTHER clgn GENE PAGES
  • Alliance (1)
  • Gene:556495 (1)
  • VEGA:OTTDARG00000027136 (1)
  • Ensembl(GRCz11):ENSDARG00000009315 (2)
  • ORTHOLOGY for clgn (Chr: 1)
    CITATIONS (26)