ZFIN ID: ZDB-GENE-060929-708
Gene Name: calmegin
Gene Symbol: clgn    Nomenclature History

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Previous Names: canx, fj49d10, wu:fj24b04, wu:fj49d10, zgc:153946

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 1 Mapping Details/Browsers
Description: Predicted to have calcium ion binding activity. Predicted to be involved in endoplasmic reticulum unfolded protein response and protein folding. Predicted to localize to endoplasmic reticulum membrane. Is expressed in blood; central nervous system; and ventral mesoderm. Orthologous to human CLGN (calmegin).
Genome Resources: Alliance (1),  Gene:556495 (1),  Ensembl(GRCz11):ENSDARG00000009315 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 5 figures (5 images) from Thisse et al., 2004 [IMAGE:7149375]
Wild-type Stages, Structures: Segmentation:14-19 somites (16.0h-19.0h) to Hatching:Long-pec (48.0h-60.0h)
 
High Throughput Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la028148Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa17985 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • zko762b Small Deletion Unknown Unknown CRISPR
  • China Zebrafish Resource Center (CZRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    CRISPR1-clgn 1
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH clgn HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH clgn VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process protein folding (more)
    Cellular Component endoplasmic reticulum (more)
    Molecular Function calcium ion binding (more)
    GO Terms (all 8)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA clgn-201 (1)    Ensembl 2956
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM clgn No data available
    MARKER RELATIONSHIPS
    clgn Contained in: [BAC] DKEY-27F16 (1) (order this)
    clgn Encodes: [EST] fj24b04, fj49d10, IMAGE:7149375 (1)
    [cDNA] MGC:153946 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001077541 (1) 2912 nt
    Genomic GenBank:BX511216 (1) 169841 nt
    Select Tool
    Polypeptide UniProtKB:Q08BY9 (1) 630 aa
    Sequence Information (all 15)
    ORTHOLOGY for clgn ( Chr: 1 )
    CITATIONS (29)