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ZIRC
ZFIN ID: ZDB-GENE-060810-94
Gene Name: lysine (K)-specific demethylase 5C
Gene Symbol: kdm5c
Sequence Ontology ID : SO:0000704

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Previous Names: im:7158173 (1), jarid1c (1), si:ch211-218o21.2, smcx (1), wu:fa28h03, wu:fi31b07

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(Including Attributions)
Location: Chr: 8 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have several functions, including DNA-binding activity transcription repressor activity, RNA polymerase II-specific, chromatin binding activity, and histone demethylase activity  ...
GENE EXPRESSION
All Expression Data: 2 figures from 2 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:7158173]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Larval:Protruding-mouth (72.0h-96.0h, 3.5mm)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la026535Tg Transgenic Insertion Unknown Unknown DNA
la026536Tg Transgenic Insertion Unknown Unknown DNA
sa15146 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa17413 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa41261 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    PHENOTYPE
    Data: 2 figures from 2 publications
    Observed in:
    DISEASE ASSOCIATED WITH kdm5c HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    syndromic X-linked intellectual disability Claes-Jensen type Mental retardation, X-linked, syndromic, Claes-Jensen type 300534
    DISEASE ASSOCIATED WITH kdm5c VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process negative regulation of neuron apoptotic process (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 8)
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA kdm5c-002 (1) 783
    mRNA kdm5c-201 (1) 6030
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM kdm5c No data available
    MARKER RELATIONSHIPS
    kdm5cContained in: [BAC] CH211-218O21 (1) (order this)
    kdm5cEncodes: [EST] fa28h03, fi31b07, IMAGE:7158173 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001123234 (1) 6030bp
    Genomic GenBank:BX537348 (1) 207282bp Blast at MegaBLAST
    Polypeptide UniProtKB:B0S6L0 (1) 1578aa
    Sequence Clusters UniGene:75967 (1)
    Sequence Information (all 24)
    ORTHOLOGY for kdm5c (Chr: 8)
    CITATIONS (26)