ZFIN ID: ZDB-GENE-060810-69
Gene Name: V-set and transmembrane domain containing 4a
Gene Symbol: vstm4a    Nomenclature History

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Previous Names: im:7157049, zgc:162468

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 13 Mapping Details/Browsers
Description: Predicted to localize to the integral component of membrane. Orthologous to human VSTM4 (V-set and transmembrane domain containing 4).
Genome Resources: Alliance (1),  Gene:553443 (1),  Ensembl(GRCz11):ENSDARG00000010154 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:7157049]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa406 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa12738 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa38951 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH vstm4a HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH vstm4a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process biological_process (more)
    Cellular Component integral component of membrane (more)
    Molecular Function molecular_function (more)
    GO Terms (all 4)
    PROTEIN FAMILIES, DOMAINS AND SITES
    Type InterPro ID Name
    Domain IPR003599 Immunoglobulin subtype
    Domain IPR007110 Immunoglobulin-like domain
    Domain IPR013106 Immunoglobulin V-set domain
    Homologous_superfamily IPR013783 Immunoglobulin-like fold
    Homologous_superfamily IPR036179 Immunoglobulin-like domain superfamily
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA vstm4a-201 (1)    Ensembl 1448
    ncRNA vstm4a-002 (1)    Ensembl 1451
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM vstm4a No data available
    MARKER RELATIONSHIPS
    vstm4a Contained in: [BAC] DKEY-70O15 (1) (order this)
    vstm4a Encodes: [EST] IMAGE:7157049 (1)
    [cDNA] MGC:162468 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001083819 (1) 1452 nt
    Genomic GenBank:BX005005 (1) 153184 nt
    Select Tool
    Polypeptide UniProtKB:Q503L7 (1) 339 aa
    Sequence Information (all 22)
    ORTHOLOGY for vstm4a ( Chr: 13 )
    CITATIONS (21)