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ZIRC
ZFIN ID: ZDB-GENE-060720-1
Gene Name: lecithin retinol acyltransferase a
Gene Symbol: lrata
Sequence Ontology ID : SO:0000704

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Previous Name: lrat

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(Including Attributions)
Location: Chr: 1 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to localize to the integral component of membrane; orthologous to human LRAT (lecithin retinol acyltransferase).
GENE EXPRESSION
All Expression Data: 3 figures from 3 publications
Wild-type Stages, Structures: Pharyngula:Prim-5 (24.0h-30.0h) to Adult (90d-730d, breeding adult)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la013604Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • zko489b Small Deletion Unknown Unknown CRISPR
  • China Zebrafish Resource Center (CZRC, ZKO consortium) (order this)
  • Targeting reagents:
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH lrata HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    Leber congenital amaurosis 14 Leber congenital amaurosis 14 613341
    Retinal dystrophy, early-onset severe 613341
    Retinitis pigmentosa, juvenile 613341
    DISEASE ASSOCIATED WITH lrata VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Cellular Component integral component of membrane (more)
    GO Terms (all 2)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR007053 (1)
  • InterPro:IPR042288 (1)
  • Pfam:PF04970 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA lrata-201 (1) 1160
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM lrata No data available
    MARKER RELATIONSHIPS
    lrataContained in: [BAC] DKEY-30K22 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001204131 (1)
    Genomic GenBank:AL935184 (1) 255909bp Blast at MegaBLAST
    Polypeptide UniProtKB:Q502D0 (1) 233aa
    Sequence Clusters UniGene:90931 (1)
    Sequence Information (all 15)
    ORTHOLOGY for lrata (Chr: 1)
    CITATIONS (22)