ZFIN ID: ZDB-GENE-060526-60
Gene Name: ARVCF delta catenin family member b
Gene Symbol: arvcfb    Nomenclature History

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Previous Names: si:ch211-173n20.1 (1), wu:fc11a08

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 5 Mapping Details/Browsers
Description: Predicted to have cadherin binding activity. Predicted to be involved in cell-cell adhesion and cell-cell junction assembly. Predicted to localize to several cellular components, including adherens junction; nucleus; and plasma membrane. Human ortholog(s) of this gene implicated in DiGeorge syndrome. Orthologous to human ARVCF (ARVCF delta catenin family member).
Genome Resources: Alliance (1),  Gene:564669 (1),  Ensembl(GRCz11):ENSDARG00000061688 (2)
GENE EXPRESSION
All Expression Data: 2 figures from Hsu et al., 2012
Wild-type Stages, Structures: Blastula:512-cell (2.75h-3.0h) to Segmentation:10-13 somites (14.0h-16.0h)
 
High Throughput Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la024927Tg Transgenic Insertion Unknown Unknown DNA
la024928Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa13911 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa33605 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa33606 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH arvcfb HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH arvcfb VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules (more)
    Cellular Component cytoplasm (more)
    Molecular Function cadherin binding (more)
    GO Terms (all 10)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA arvcfb-202 (1)    Ensembl 575
    arvcfb-203 (1)    Ensembl 679
    arvcfb-204 (1)    Ensembl 9165
    arvcfb-206 (1)    Ensembl 774
    arvcfb-207 (1)    Ensembl 763
    ncRNA arvcfb-003 (1)    Ensembl 610
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM arvcfb No data available
    MARKER RELATIONSHIPS
    arvcfb Contained in: [BAC] CH211-173N20 (1), CH211-214J8 (1), DKEY-97G11 (1) (order this), DKEY-104K17 (1) (order this)
    arvcfb Encodes: [EST] fc11a08
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001128534 (1) 2961 nt
    Genomic GenBank:BX510923 (1) 165838 nt
    Select Tool
    Polypeptide UniProtKB:A2BGY1 (1) 986 aa
    Sequence Information (all 51)
    ORTHOLOGY for arvcfb ( Chr: 5 )
    CITATIONS (24)