ZFIN ID: ZDB-GENE-060526-377
Gene Name: whirlin b
Gene Symbol: whrnb
Sequence Ontology ID : SO:0000704

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Previous Names: dfnb31b (1), si:rp71-10d23.1 (1)

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(Including Attributions)
Location: Chr: 5 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: Fig. 7 from Blanco et al., 2014
Wild-type Stages, Structures: Larval:Day 5 (120.0h-144.0h, 3.9mm, 6 teeth) to Larval:Day 5 (120.0h-144.0h, 3.9mm, 6 teeth)
  hair cell
MUTATIONS AND SEQUENCE TARGETING REAGENTSNo data available
PHENOTYPE No data available
DISEASE ASSOCIATED WITH whrnb HUMAN ORTHOLOG
Disease Ontology Term OMIM Term OMIM Phenotype ID
autosomal recessive nonsyndromic deafness 31 Deafness, autosomal recessive 31 607084
Usher syndrome type 2D Usher syndrome, type 2D 611383
GENE ONTOLOGY
Ontology GO Term
Biological Process sensory perception of light stimulus (more)
GO Terms (all 2)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001478 (1)
  • InterPro:IPR033028 (1)
  • InterPro:IPR036034 (1)
  • PROSITE:PS50106 (1)
  • Pfam:PF00595 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA dfnb31b-001 (1) 7982
    ottdart00000021558 (1) 718
     Withdrawn Transcriptsextinct
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM whrnb No data available
    MARKER RELATIONSHIPS
    whrnbContained in: [BAC] CH73-244M7 (1) (order this), DKEY-61L1 (1) (order this), RP71-10D23 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_005171948 (1)
    Genomic GenBank:BX470066 (1) 178499bp
    Select Tool
    Polypeptide UniProtKB:F1R807 (1) 946aa
    Sequence Information (all 15)
    OTHER whrnb GENE PAGES
  • Alliance (1)
  • Gene:100534775 (1)
  • VEGA:OTTDARG00000017867 (1)
  • Ensembl(GRCz10):ENSDARG00000068166 (1)
  • ORTHOLOGY for whrnb (Chr: 5)
    CITATIONS (13)