ZFIN ID: ZDB-GENE-060526-205
Gene Name: activating transcription factor 5a
Gene Symbol: atf5a    Nomenclature History

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Previous Name: si:dkey-127j5.5

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 5 Mapping Details/Browsers
Description: Predicted to have DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to localize to nucleus. Is expressed in pharyngeal arch. Orthologous to human ATF5 (activating transcription factor 5).
Genome Resources: Alliance (1),  Gene:566223 (1),  Ensembl(GRCz11):ENSDARG00000068096 (2)
GENE EXPRESSION
All Expression Data: Fig. 4 from Hou et al., 2017
Wild-type Stages, Structures: Hatching:Pec-fin (60.0h-72.0h) to Larval:Day 4 (96.0h-120.0h)
 
High Throughput Expression: GEO (1) Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa31451 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa40462 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH atf5a HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH atf5a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process regulation of transcription, DNA-templated (more)
    Cellular Component nucleus (more)
    Molecular Function DNA-binding transcription factor activity (more)
    GO Terms (all 6)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA atf5a-201 (1)    Ensembl 2336
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM atf5a No data available
    MARKER RELATIONSHIPS
    atf5a Contained in: [BAC] DKEY-180I4 (1) (order this)
    atf5a Encodes: [cDNA] MGC:194559 (1), MGC:194586 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001128731 (1) 2336 nt
    Genomic GenBank:BX294389 (1) 144422 nt
    Select Tool
    Polypeptide UniProtKB:A2BFU3 (1) 511 aa
    Sequence Information (all 13)
    ORTHOLOGY for atf5a ( Chr: 5 )
    CITATIONS (22)