ZFIN ID: ZDB-GENE-060526-151
Gene Name: si:ch211-283g2.2
Gene Symbol: si:ch211-283g2.2    Nomenclature History

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 5 Mapping Details/Browsers
Description: Predicted to have carbohydrate binding activity. Predicted to localize to the integral component of membrane. Human ortholog(s) of this gene implicated in aspergillosis; dengue disease; human immunodeficiency virus infectious disease; and tuberculosis. Orthologous to human CLEC4M (C-type lectin domain family 4 member M) and CD209 (CD209 molecule).
Genome Resources: Alliance (1),  Ensembl(GRCz11):ENSDARG00000092515 (2)

Nomenclature Note: This gene is derived from the zebrafish genome sequencing and annotation project. When more is known about the gene, the current nomenclature will be replaced with more traditional zebrafish gene nomenclature. The prefix 'si:' indicates that this gene is represented by annotated genomic sequence from the Sanger Institute.

GENE EXPRESSION No data available
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa2194 Point Mutation Unknown Premature Stop ENU
PHENOTYPE No data available
DISEASE ASSOCIATED WITH si:ch211-283g2.2 HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH si:ch211-283g2.2 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Cellular Component integral component of membrane (more)
Molecular Function carbohydrate binding (more)
GO Terms (all 3)
PROTEIN FAMILIES, DOMAINS AND SITES
Type InterPro ID Name
Domain IPR001304 C-type lectin-like
Homologous_superfamily IPR016186 C-type lectin-like/link domain superfamily
Homologous_superfamily IPR016187 C-type lectin fold
Conserved_site IPR018378 C-type lectin, conserved site
Domain IPR033989 CD209-like, C-type lectin-like domain
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA si:ch211-283g2.2-201 (1)    Ensembl 778
ncRNA si:ch211-283g2.2-001 (1) 308
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM si:ch211-283g2.2 No data available
MARKER RELATIONSHIPS
si:ch211-283g2.2 Contained in: [BAC] CH211-283G2 (1)
SEQUENCE INFORMATION
Type Accession # Length (bp/aa) Analysis
Genomic GenBank:CR407559 (1) 149707 bp
Select Tool
Polypeptide UniProtKB:A2CEH7 (1) 239 aa
Sequence Information (all 4)
ORTHOLOGY for si:ch211-283g2.2 ( Chr: 5 )
CITATIONS (8)