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General Information
ZIRC
ZFIN ID: ZDB-GENE-060503-892
Gene Name: si:ch211-81a5.5
Gene Symbol: si:ch211-81a5.5
Sequence Ontology ID : SO:0001217

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(Including Attributions)
Location: Chr: 19 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Orthologous to human LRRC71 (leucine rich repeat containing 71).

Nomenclature Note: This gene is derived from the zebrafish genome sequencing and annotation project. When more is known about the gene, the current nomenclature will be replaced with more traditional zebrafish gene nomenclature. The prefix 'si:' indicates that this gene is represented by annotated genomic sequence from the Sanger Institute.

GENE EXPRESSION
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa23446 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa45659 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH si:ch211-81a5.5 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH si:ch211-81a5.5 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY No data available
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001611 (1)
  • InterPro:IPR032675 (1)
  • Pfam:PF13516 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA si:ch211-81a5.5-201 (1) 1956
    si:ch211-81a5.5-202 (1) 466
    aberrant processed transcript si:ch211-81a5.5-203 (1) 559
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM si:ch211-81a5.5 No data available
    MARKER RELATIONSHIPS
    si:ch211-81a5.5 Contained in: [BAC] CH211-81A5 (1) (order this)
    si:ch211-81a5.5 Encodes: [cDNA] MGC:162005 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001044874 (1) 1974 bp
    Genomic GenBank:CR626935 (1) 166134 bp
    Select Tool
    Polypeptide UniProtKB:Q1L8U9 (1) 481 aa
    Sequence Clusters UniGene:86261 (1)
    Sequence Information (all 17)
    ORTHOLOGY for si:ch211-81a5.5 ( Chr: 19 )
    CITATIONS (12)