Gene

srbd1

ID

ZDB-GENE-081107-19

Name

S1 RNA binding domain 1

Symbol

srbd1 Nomenclature History

Previous Names

si:ch211-117n7.8
si:ch211-219o4.1

Type

protein_coding_gene

Location

Chr: 13 Mapping Details/Browsers

Description

Predicted to have mRNA binding activity. Predicted to be involved in translation. Orthologous to human SRBD1 (S1 RNA binding domain 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With srbd1 Human Ortholog

No data available

Associated With srbd1 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR003029	S1 domain
Domain	IPR006641	YqgF/RNase H-like domain
Domain	IPR018974	Tex-like protein, N-terminal
Domain	IPR032639	Tex protein, YqgF-like domain
Domain	IPR041692	HHH domain 9
Domain	IPR044146	Tex, S1 domain
Homologous_superfamily	IPR010994	RuvA domain 2-like
Homologous_superfamily	IPR012337	Ribonuclease H-like superfamily
Homologous_superfamily	IPR012340	Nucleic acid-binding, OB-fold
Homologous_superfamily	IPR023319	Tex-like protein, HTH domain superfamily
Homologous_superfamily	IPR023323	Tex-like domain superfamily
Homologous_superfamily	IPR037027	YqgF/RNase H-like domain superfamily

Domain Details Per Protein

Protein	Length	HHH domain 9	Nucleic acid-binding, OB-fold	Ribonuclease H-like superfamily	RuvA domain 2-like	S1 domain	Tex-like domain superfamily	Tex-like protein, HTH domain superfamily	Tex-like protein, N-terminal	Tex protein, YqgF-like domain	Tex, S1 domain	YqgF/RNase H-like domain	YqgF/RNase H-like domain superfamily
UniProtKB:A0A8M9Q4Z5 InterPro	441
UniProtKB:A0A8M9QFT1 InterPro	982

Transcripts

Genome Browsers

Ensembl

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	srbd1-201 (1) Ensembl	Havana	2149 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	srbd1-202 (1) Ensembl	Havana	774 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations