Research
General Information
ZIRC
ZFIN ID: ZDB-GENE-060503-333
Gene Name: chloride channel 1a
Gene Symbol: clcn1a
Previous Name: si:dkey-14o18.5 (1)
Nomenclature History
GENE EXPRESSION No data available
MUTANTS AND TARGETED KNOCKDOWNS
Alleles: sa10992, sa12840, sa16717, sa17158, sa23449
PHENOTYPE
Phenotype of Human Orthologue OMIM Phenotype ID
Myotonia congenita, dominant 160800
Myotonia congenita, recessive 255700
Myotonia levior, recessive
GENE ONTOLOGY
Ontology GO Term
Biological Process chloride transport (more)
Cellular Component integral component of membrane (more)
Molecular Function adenyl nucleotide binding (more)
GO Terms (all 7)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000644 (1)
  • InterPro:IPR001807 (1)
  • InterPro:IPR014743 (1)
  • PROSITE:PS51371 (1)
  • Pfam:PF00571 (1)
  • Pfam:PF00654 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA clcn1a-001 (1) 3951
    GENE PRODUCT DESCRIPTION
    ANTIBODIES No data available
    CONSTRUCTS WITH SEQUENCES FROM clcn1a No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    clcn1a Contained in: [BAC] DKEY-14O18 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001082910 (1) 2923 bp
    Genomic GenBank:BX927218 (1) 208809 bp Blast at MegaBLAST
    Polypeptide UniProtKB:F1Q5M3 (1) 1011 aa
    Sequence Clusters UniGene:140226 (1)
    Sequence Information (all 8)
    OTHER clcn1a GENE PAGES
  • Gene:795133 (1)
  • VEGA:OTTDARG00000014838 (1)
  • Ensembl(Zv9):ENSDARG00000062084 (1)
  • MAPPING INFORMATION
    Chr: 19 Details
    ORTHOLOGY
      Evidence
    Species Symbol Chromosome (Position) Accession # AA CL
    Zebrafish clcn1a 19  
    Human CLCN1 7 (7q35)
  • OMIM:118425
  • Gene:1180
  • Mouse Clcn1 6 ( 20.57 cM)
  • MGI:88417
  • Gene:12723
  • CITATIONS (12)