ZFIN ID: ZDB-GENE-060503-333
Gene Name: chloride channel, voltage-sensitive 1a
Gene Symbol: clcn1a

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Previous Name: si:dkey-14o18.5 (1)

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(Including Attributions)
Location: Chr: 19 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: Fig. 2 from Wang et al., 2015
Wild-type Stages, Structures: Adult (90d-730d, breeding adult) to Adult (90d-730d, breeding adult)
  gill
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa10992 Point Mutation Unknown Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • European Zebrafish Resource Center (EZRC) (order this)
  • sa12840 Point Mutation Unknown Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • European Zebrafish Resource Center (EZRC) (order this)
  • sa16717 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa17158 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa23449 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa32234 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH clcn1a HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    myotonia congenita Myotonia congenita, dominant 160800
    Myotonia congenita, recessive 255700
    Myotonia levior, recessive
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process chloride transport (more)
    Cellular Component integral component of membrane (more)
    Molecular Function ion channel activity (more)
    GO Terms (all 11)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000644 (1)
  • InterPro:IPR001807 (1)
  • InterPro:IPR014743 (1)
  • PROSITE:PS51371 (1)
  • Pfam:PF00654 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA clcn1a-001 (1) 3951
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYSNo data available
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM clcn1a No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    clcn1aContained in: [BAC] DKEY-14O18 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001082910 (1) 2923bp
    Genomic GenBank:BX927218 (1) 208809bp Blast at MegaBLAST
    Polypeptide UniProtKB:F1Q5M3 (1) 1011aa
    Sequence Clusters UniGene:140226 (1)
    Sequence Information (all 17)
    OTHER clcn1a GENE PAGES
  • Gene:795133 (1)
  • VEGA:OTTDARG00000014838 (1)
  • Ensembl(GRCz10):ENSDARG00000062084 (1)
  • ORTHOLOGY for clcn1a (Chr: 19)
    Species Symbol Chromosome Accession # Evidence
    Human CLCN1 7
  • Gene:1180
  • OMIM:118425
  • HGNC:2019
  • Amino acid sequence comparison (1)
    Conserved genome location (synteny) (2)
    Phylogenetic tree (1)
    Mouse Clcn1 6
  • MGI:88417
  • Gene:12723
  • Amino acid sequence comparison (1)
    Conserved genome location (synteny) (1)
    Download Curated Orthology
    CITATIONS (14)