Gene
smarcc1b
- ID
- ZDB-GENE-060503-273
- Name
- SWI/SNF related BAF chromatin remodeling complex subunit C1b
- Symbol
- smarcc1b Nomenclature History
- Previous Names
-
- si:dkeyp-114f9.3
- Type
- protein_coding_gene
- Location
- Chr: 19 Mapping Details/Browsers
- Description
- Predicted to have histone binding activity. Predicted to be involved in ATP-dependent chromatin remodeling and positive regulation of transcription, DNA-templated. Predicted to localize to SWI/SNF complex; nBAF complex; and npBAF complex. Orthologous to human SMARCC1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1).
- Genome Resources
- Note
- None
- Comparative Information
- All Expression Data
- 1 figure from Wang et al., 2017
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Disease Ontology Term | Multi-Species Data | OMIM Term | OMIM Phenotype ID |
---|---|---|---|
{Hydrocephalus, congenital, 5, susceptibility to} | 620241 |
Domain, Family, and Site Summary
Type | InterPro ID | Name |
---|---|---|
Domain | IPR001005 | SANT/Myb domain |
Domain | IPR007526 | SWIRM domain |
Domain | IPR017884 | SANT domain |
Domain | IPR032448 | SMARCC, SWIRM-associated domain |
Domain | IPR032450 | SMARCC, N-terminal |
Domain | IPR032451 | SMARCC, C-terminal |
Domain | IPR049898 | MarR-like, BRCT and chromo domains module |
Homologous_superfamily | IPR009057 | Homedomain-like superfamily |
Homologous_superfamily | IPR036388 | Winged helix-like DNA-binding domain superfamily |
Homologous_superfamily | IPR036420 | BRCT domain superfamily |
Domain Details Per Protein
Protein | Length | BRCT domain superfamily | Homedomain-like superfamily | MarR-like, BRCT and chromo domains module | SANT domain | SANT/Myb domain | SMARCC, C-terminal | SMARCC, N-terminal | SMARCC, SWIRM-associated domain | SWIRM domain | Winged helix-like DNA-binding domain superfamily |
---|---|---|---|---|---|---|---|---|---|---|---|
UniProtKB:A4QN49
|
959 |
Type | Name | Annotation Method | Length (nt) | Analysis |
---|---|---|---|---|
mRNA |
smarcc1b-201
(1)
|
Havana | 3233 nt |
Interactions and Pathways
No data available
Plasmids
No data available