Gene

smarcc1b

ID
ZDB-GENE-060503-273
Name
SWI/SNF related BAF chromatin remodeling complex subunit C1b
Symbol
smarcc1b Nomenclature History
Previous Names
  • si:dkeyp-114f9.3
Type
protein_coding_gene
Location
Chr: 19 Mapping Details/Browsers
Description
Predicted to have histone binding activity. Predicted to be involved in ATP-dependent chromatin remodeling and positive regulation of transcription, DNA-templated. Predicted to localize to SWI/SNF complex; nBAF complex; and npBAF complex. Orthologous to human SMARCC1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
1 figure from Wang et al., 2017
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With smarcc1b Human Ortholog
Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
{Hydrocephalus, congenital, 5, susceptibility to} 620241
Associated With smarcc1b Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR001005 SANT/Myb domain
Domain IPR007526 SWIRM domain
Domain IPR017884 SANT domain
Domain IPR032448 SMARCC, SWIRM-associated domain
Domain IPR032450 SMARCC, N-terminal
Domain IPR032451 SMARCC, C-terminal
Domain IPR049898 MarR-like, BRCT and chromo domains module
Homologous_superfamily IPR009057 Homedomain-like superfamily
Homologous_superfamily IPR036388 Winged helix-like DNA-binding domain superfamily
Homologous_superfamily IPR036420 BRCT domain superfamily
Domain Details Per Protein
Protein Length BRCT domain superfamily Homedomain-like superfamily MarR-like, BRCT and chromo domains module SANT domain SANT/Myb domain SMARCC, C-terminal SMARCC, N-terminal SMARCC, SWIRM-associated domain SWIRM domain Winged helix-like DNA-binding domain superfamily
UniProtKB:A4QN49 959
Transcripts
Genome Browsers
Type Name Annotation Method Length (nt) Analysis
mRNA smarcc1b-201 (1) Havana 3233 nt
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations