ZFIN ID: ZDB-GENE-060503-121
Gene Name: si:ch211-216l23.1
Gene Symbol: si:ch211-216l23.1    Nomenclature History

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Previous Name: zgc:158272

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 18 Mapping Details/Browsers
Description: Predicted to have DNA binding activity and metal ion binding activity. Predicted to be involved in cell differentiation and nervous system development. Predicted to localize to nucleus. Human ortholog(s) of this gene implicated in nephronophthisis 14. Orthologous to human ZNF423 (zinc finger protein 423).
Genome Resources: Alliance (1),  Gene:566696 (1),  Ensembl(GRCz11):ENSDARG00000059707 (2)

Nomenclature Note: This gene is derived from the zebrafish genome sequencing and annotation project. When more is known about the gene, the current nomenclature will be replaced with more traditional zebrafish gene nomenclature. The prefix 'si:' indicates that this gene is represented by annotated genomic sequence from the Sanger Institute.

GENE EXPRESSION
High Throughput Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la027918Tg Transgenic Insertion Unknown Unknown DNA
la027919Tg Transgenic Insertion Unknown Unknown DNA
sa6510 Point Mutation Unknown Premature Stop ENU
sa7445 Point Mutation Unknown Missense ENU
PHENOTYPE No data available
DISEASE ASSOCIATED WITH si:ch211-216l23.1 HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH si:ch211-216l23.1 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process cell differentiation (more)
Cellular Component nucleus (more)
Molecular Function DNA binding (more)
GO Terms (all 9)
PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA znf423-201 (1)    Ensembl 3986
Browsers: UCSCNCBIEnsemblZFIN
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM si:ch211-216l23.1 No data available
MARKER RELATIONSHIPS
si:ch211-216l23.1 Contained in: [BAC] CH211-216L23 (1)
si:ch211-216l23.1 Contains: [STS] chunp6728
si:ch211-216l23.1 Encodes: [cDNA] MGC:158272 (1)
SEQUENCE INFORMATION
Type Accession # Length (nt/aa) Analysis
RNA RefSeq:NM_001080030 (1) 5133 nt
Genomic GenBank:BX470162 (1) 215723 nt Blast at MegaBLAST
Polypeptide UniProtKB:A0A2R8QLR2 (1) 1379 aa
Sequence Information (all 25)
ORTHOLOGY for si:ch211-216l23.1 ( Chr: 18 )
CITATIONS (20)