ZFIN ID: ZDB-GENE-060428-2
Gene Name: sterile alpha motif domain containing 11
Gene Symbol: samd11    Nomenclature History

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Previous Name: samd11l (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 23 Mapping Details/Browsers
Description: Predicted to have DNA binding activity and transcription coactivator activity. Predicted to localize to the nucleus. Orthologous to human SAMD11 (sterile alpha motif domain containing 11).
Genome Resources: Alliance (1),  Gene:569122 (1),  Ensembl(GRCz11):ENSDARG00000077852 (2)
GENE EXPRESSION
Curated Microarray Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la028509Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la028510Tg Transgenic Insertion Unknown Unknown DNA
    sa13428 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa43976 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH samd11 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH samd11 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 3)
    PROTEIN FAMILIES, DOMAINS AND SITES
    Type InterPro ID Name
    Domain IPR000770 SAND domain
    Domain IPR001660 Sterile alpha motif domain
    Homologous_superfamily IPR010919 SAND-like domain superfamily
    Homologous_superfamily IPR013761 Sterile alpha motif/pointed domain superfamily
    Family IPR024830 Glucocorticoid modulatory element-binding protein 1/2
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    aberrant processed transcript samd11-202 (1)    Ensembl 1054
    mRNA samd11-201 (1)    Ensembl 848
    samd11-203 (1)    Ensembl 4308
    Browsers: NCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM samd11 No data available
    MARKER RELATIONSHIPS
    samd11 Contained in: [BAC] DKEY-24D19 (order this), DKEY-98J1 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_009296907 (1)
    Genomic GenBank:AL845437 (1) 239084 bp Blast at MegaBLAST
    Polypeptide UniProtKB:E7F6B2 (1) 874 aa
    Sequence Information (all 28)
    ORTHOLOGY for samd11 ( Chr: 23 )
    CITATIONS (19)