ZFIN ID: ZDB-GENE-060421-6020
Gene Name: neurotrimin
Gene Symbol: ntm    Nomenclature History

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Previous Name: zgc:136455

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 10 Mapping Details/Browsers
Description: Exhibits identical protein binding activity. Is expressed in head; nervous system; and otic vesicle. Human ortholog(s) of this gene implicated in ovarian cancer. Orthologous to several human genes including OPCML (opioid binding protein/cell adhesion molecule like).
Genome Resources: Alliance (1),  Gene:678534 (1),  Ensembl(GRCz11):ENSDARG00000018065 (2)
GENE EXPRESSION
All Expression Data: 7 figures from 2 publications
Directly Submitted Expression Data: 6 figures (13 images) from Thisse et al., 2008 [cssl:d815]
Wild-type Stages, Structures: Segmentation:20-25 somites (19.0h-22.0h) to Hatching:Long-pec (48.0h-60.0h)
 
High Throughput Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
a308 Small Deletion Unknown Unknown CRISPR
la017508Tg Transgenic Insertion Unknown Unknown DNA
la027169Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa27629 Point Mutation Unknown Premature Stop ENU
    Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    CRISPR1-ntm 1
    DISEASE ASSOCIATED WITH ntm HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH ntm VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Molecular Function identical protein binding (more)
    GO Terms (all 2)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA ntm-201 (1)    Ensembl 1084
    ntm-202 (1)    Ensembl 1022
    ncRNA ntm-003 (1)    Ensembl 432
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM ntm No data available
    MARKER RELATIONSHIPS
    ntm Contained in: [BAC] CH73-46N19 (1), CH73-128G7 (1), CH211-30M1 (1), CH211-63M22 (1), CH211-242F18 (1), DKEY-16K12 (1) (order this), DKEYP-13E7 (1), DKEYP-94F8 (1)
    ntm Encodes: [cDNA] cssl:d815 (1), MGC:136455 (1), MGC:198193 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001003852 (1)
    Genomic GenBank:CT583725 (1) 185115 nt
    Select Tool
    Polypeptide UniProtKB:E7FH58 (1) 375 aa
    Sequence Information (all 55)
    ORTHOLOGY for ntm ( Chr: 10 )
    CITATIONS (26)