ZFIN ID: ZDB-GENE-051120-57
Gene Name: SH3 domain containing 21
Gene Symbol: sh3d21    Nomenclature History

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Previous Name: zgc:123285

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 16 Mapping Details/Browsers
Description: Is expressed in corneal epithelium. Orthologous to human SH3D21 (SH3 domain containing 21).
Genome Resources: Alliance (1),  Gene:641492 (1),  Ensembl(GRCz11):ENSDARG00000099448 (1)
GENE EXPRESSION
All Expression Data: Fig. 4 from Takamiya et al., 2015
Wild-type Stages, Structures: Juvenile:Days 30-44 (30d-45d, 10 mm, adult fins/pigment) to Juvenile:Days 30-44 (30d-45d, 10 mm, adult fins/pigment)
 
Curated Microarray Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa10648 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa36212 Point Mutation Unknown Splice Site, Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH sh3d21 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH sh3d21 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process biological_process (more)
    Cellular Component cellular_component (more)
    Molecular Function molecular_function (more)
    GO Terms (all 3)
    PROTEIN FAMILIES, DOMAINS AND SITES
    Type InterPro ID Name
    Domain IPR001452 SH3 domain
    Domain IPR035468 SH3D21, SH3 domain
    Homologous_superfamily IPR036028 SH3-like domain superfamily
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA sh3d21-201 (1)    Ensembl 751
    sh3d21-202 (1)    Ensembl 1986
    sh3d21-204 (1)    Ensembl 612
    sh3d21-205 (1)    Ensembl 705
    ncRNA sh3d21-005 (1)    Ensembl 779
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM sh3d21 No data available
    MARKER RELATIONSHIPS
    sh3d21 Contained in: [BAC] DKEYP-114B5 (1)
    sh3d21 Encodes: [cDNA] MGC:123285 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001037432 (1) 1889 bp
    Genomic GenBank:BX321921 (1) 208774 bp Blast at MegaBLAST
    Polypeptide UniProtKB:A0A0R4IK14 (1) 425 aa
    Sequence Information (all 20)
    ORTHOLOGY for sh3d21 ( Chr: 16 )
    CITATIONS (14)