ZFIN ID: ZDB-GENE-051120-180
Gene Name: TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor
Gene Symbol: taf5    Nomenclature History

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Previous Names: wu:fc38g05, zgc:123129

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 1 Mapping Details/Browsers
Description: Predicted to localize to the transcription factor TFIID complex. Orthologous to human TAF5 (TATA-box binding protein associated factor 5).
Genome Resources: Alliance (1),  Gene:641491 (1),  Ensembl(GRCz11):ENSDARG00000018325 (2)
GENE EXPRESSION
Curated Microarray Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
hg102 Small Deletion Unknown Unknown CRISPR
sa12584 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa38290 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    CRISPR1-taf5 2
    DISEASE ASSOCIATED WITH taf5 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH taf5 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY No data available
    PROTEIN FAMILIES, DOMAINS AND SITES
    Type InterPro ID Name
    Conserved_site IPR019775 WD40 repeat, conserved site
    Domain IPR006594 LIS1 homology motif
    Domain IPR007582 TFIID subunit TAF5, NTD2 domain
    Domain IPR017986 WD40-repeat-containing domain
    Family IPR037783 Transcription initiation factor TFIID subunit 5
    Homologous_superfamily IPR015943 WD40/YVTN repeat-like-containing domain superfamily
    Homologous_superfamily IPR036322 WD40-repeat-containing domain superfamily
    Homologous_superfamily IPR037264 TFIID subunit TAF5, NTD2 domain superfamily
    Repeat IPR001680 WD40 repeat
    Repeat IPR020472 G-protein beta WD-40 repeat
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA taf5-201 (1)    Ensembl 2701
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM taf5 No data available
    MARKER RELATIONSHIPS
    taf5 Contained in: [BAC] DKEYP-80C12 (1)
    taf5 Encodes: [EST] fc38g05 (1)
    [cDNA] MGC:123129 (1), MGC:158587 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001037431 (1) 2690 nt
    Genomic GenBank:CR812943 (1) 225846 nt Blast at MegaBLAST
    Polypeptide UniProtKB:B8JIQ0 (1) 756 aa
    Sequence Information (all 19)
    ORTHOLOGY for taf5 ( Chr: 1 )
    CITATIONS (20)