ZFIN ID: ZDB-GENE-050913-73
Gene Name: lipolysis stimulated lipoprotein receptor
Gene Symbol: lsr
Sequence Ontology ID : SO:0000704

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Previous Names: lsrl, zgc:114089

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(Including Attributions)
Location: Chr: 15 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Involved in endoderm development and pancreas development; predicted to localize to the integral component of membrane; orthologous to human LSR (lipolysis stimulated lipoprotein receptor).
GENE EXPRESSION
All Expression Data: 14 figures from 2 publications
Directly Submitted Expression Data: 6 figures (25 images) from Thisse et al., 2008 [cssl:d838]
  6 figures (27 images) from Thisse et al., 2008 [cssl:d0667]
Wild-type Stages, Structures: Gastrula:50%-epiboly (5.25h-5.66h) to Larval:Protruding-mouth (72.0h-96.0h, 3.5mm)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa8876 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    PHENOTYPE
    Data: 2 figures from Dokmanovic-Chouinard et al., 2008
    Observed in:
    DISEASE ASSOCIATED WITH lsr HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH lsr VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process endoderm development (more)
    Cellular Component integral component of membrane (more)
    Molecular Function molecular_function (more)
    GO Terms (all 5)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR003599 (1)
  • InterPro:IPR007110 (1)
  • InterPro:IPR008664 (1)
  • InterPro:IPR036179 (1)
  • PROSITE:PS50835 (1)
  • Pfam:PF05624 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA lsr-003 (1) 910
    mRNA lsr-201 (1) 2588
    lsr-202 (1) 2621
    lsr-205 (1) 722
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM lsr No data available
    MARKER RELATIONSHIPS
    lsrContained in: [BAC] DKEY-30E9 (1) (order this)
    lsrEncodes: [EST] cssl:d0667 (1) (order this)
    [cDNA] cssl:d838 (1) (order this), MGC:114089 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001025472 (1) 2627bp
    Genomic GenBank:CT027647 (1) 242225bp Blast at MegaBLAST
    Polypeptide UniProtKB:Q6GMG1 (1) 638aa
    Sequence Clusters UniGene:78908 (1)
    Sequence Information (all 29)
    OTHER lsr GENE PAGES
  • Alliance (1)
  • Gene:553218 (1)
  • VEGA:OTTDARG00000028107 (1)
  • Ensembl(GRCz11):ENSDARG00000099291 (1)
  • ORTHOLOGY for lsr (Chr: 15)
    CITATIONS (18)