ZFIN ID: ZDB-GENE-050913-35
Gene Name: protein kinase C and casein kinase substrate in neurons 1b
Gene Symbol: pacsin1b
Sequence Ontology ID : SO:0000704

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Previous Names: pacsin1, fe25d06, syndapin I (1), wu:fe25d06, zgc:114042

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(Including Attributions)
Location: Chr: 6 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 3 figures from Schuler et al., 2013
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Larval:Day 5 (120.0h-144.0h, 3.9mm, 6 teeth)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa38582 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa44647 Point Mutation Unknown Unknown ENU
    Targeting reagents:
    PHENOTYPE
    Data: 4 figures from Schuler et al., 2013
    Observed in:
    DISEASE ASSOCIATED WITH pacsin1b HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH pacsin1b VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process auditory receptor cell stereocilium organization (more)
    Cellular Component cell junction (more)
    Molecular Function lipid binding (more)
    GO Terms (all 20)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001060 (1)
  • InterPro:IPR001452 (1)
  • InterPro:IPR027267 (1)
  • InterPro:IPR028518 (1)
  • InterPro:IPR031160 (1)
  • InterPro:IPR035743 (1)
  • InterPro:IPR036028 (1)
  • InterPro:IPR037454 (1)
  • PROSITE:PS50002 (1)
  • PROSITE:PS51741 (1)
  • Pfam:PF00018 (1)
  • Pfam:PF00611 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA pacsin1b-001 (1) 2663
    pacsin1b-002 (1) 2622
    pacsin1b-003 (1) 561
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM pacsin1b No data available
    MARKER RELATIONSHIPS
    pacsin1bContained in: [BAC] CH211-135I4 (1) (order this)
    [Fosmid] CH1073-194M6 (1) (order this), CH1073-333H4 (1) (order this), ZFOS-1862H6 (1)
    pacsin1bEncodes: [EST] fe25d06
    [cDNA] MGC:114042 (1) (order this), MGC:192905 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001033728 (1) 2651bp
    Genomic GenBank:CU694224 (1) 160982bp
    Select Tool
    Polypeptide UniProtKB:B2GTA5 (1) 445aa
    Sequence Clusters UniGene:36545 (1)
    Sequence Information (all 28)
    OTHER pacsin1b GENE PAGES
  • Alliance (1)
  • Gene:619246 (1)
  • VEGA:OTTDARG00000034543 (1)
  • Ensembl(GRCz11):ENSDARG00000042128 (2)
  • ORTHOLOGY for pacsin1b (Chr: 6)
    CITATIONS (22)