ZFIN ID: ZDB-GENE-050913-153
Gene Name: BarH-like homeobox 2
Gene Symbol: barhl2
Sequence Ontology ID : SO:0000704

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Previous Names: wu:fq39g04, zgc:113948

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(Including Attributions)
Location: Chr: 6 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have DNA-binding activity transcription activator activity, RNA polymerase II-specific and RNA polymerase II regulatory region sequence-specific DNA binding activity; predicted to be  ...
GENE EXPRESSION
All Expression Data: 31 figures from 12 publications
Directly Submitted Expression Data: 6 figures (13 images) from Thisse et al., 2005 [eu113]
  4 figures (17 images) from Rauch et al., 2003 [fq39g04]
Wild-type Stages, Structures: Gastrula:90%-epiboly (9.0h-10.0h) to Larval:Day 5 (120.0h-144.0h, 3.9mm, 6 teeth)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa33851 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH barhl2 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH barhl2 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process regulation of transcription, DNA-templated (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 7)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001356 (1)
  • InterPro:IPR009057 (1)
  • InterPro:IPR017970 (1)
  • InterPro:IPR020479 (1)
  • PROSITE:PS00027 (1)
  • PROSITE:PS50071 (1)
  • Pfam:PF00046 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA barhl2-001 (1) 1711
    ncRNA barhl2-002 (1) 766
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM barhl2
    MARKER RELATIONSHIPS
    barhl2Contained in: [BAC] CH211-15L16 (1) (order this)
    barhl2Encodes: [EST] eu113 (1), fq39g04 (1) (order this)
    [cDNA] MGC:113948 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_205740 (1) 1721bp
    Genomic GenBank:CR385085 (1) 211060bp Blast at MegaBLAST
    Polypeptide UniProtKB:Q4V975 (1) 364aa
    Sequence Clusters UniGene:79590 (1)
    Sequence Information (all 14)
    OTHER barhl2 GENE PAGES
  • Alliance (1)
  • Gene:100001699 (1)
  • VEGA:OTTDARG00000027244 (1)
  • ORTHOLOGY for barhl2 (Chr: 6)
    CITATIONS (36)