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ZIRC
ZFIN ID: ZDB-GENE-050809-105
Gene Name: AT rich interactive domain 4A (RBP1-like)
Gene Symbol: arid4a
Sequence Ontology ID : SO:0001217

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Previous Names: fc43f03, fi11g07, fi14h03, wu:fc43f03, wu:fi06c05, wu:fi11g07, wu:fi14h03, zgc:110391 (1)

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(Including Attributions)
Location: Chr: 17 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have transcription regulatory region DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to localize to the nucleus. Orthologous  ...
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:7159240]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la011721Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la013018Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa15044 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa23011 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa45596 Point Mutation Unknown Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH arid4a HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH arid4a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process regulation of transcription by RNA polymerase II (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 4)
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA arid4a-201 (1) 3687
    arid4a-202 (1) 2172
    arid4a-204 (1) 5727
    lincRNA ottdart00000059129 (1) 540
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM arid4a No data available
    MARKER RELATIONSHIPS
    arid4a Contained in: [BAC] CH73-34C17 (1) (order this), CH211-51H21 (1) (order this)
    arid4a Encodes: [EST] fc43f03, fi06c05 (1), fi11g07, fi14h03, IMAGE:7159240 (1) (order this)
    [cDNA] MGC:110391 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001031668 (1) 3706 bp
    Genomic GenBank:CU076099 (1) 156216 bp
    Select Tool
    Polypeptide UniProtKB:F1QWQ1 (1) 1355 aa
    Sequence Clusters UniGene:79073 (1)
    Sequence Information (all 33)
    ORTHOLOGY for arid4a ( Chr: 17 )
    CITATIONS (26)