ZFIN ID: ZDB-GENE-050721-2
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Gene Name: activating transcription factor 7a
Gene Symbol: atf7a    Nomenclature History

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Previous Name: zgc:136234

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 23 Mapping Details/Browsers
Description: Predicted to have DNA binding activity; DNA-binding transcription factor activity; and metal ion binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to localize to the nucleus. Is expressed in axial chorda mesoderm and notochord. Orthologous to human ATF7 (activating transcription factor 7).
Genome Resources: Alliance (1),  Gene:566279 (1),  Ensembl(GRCz11):ENSDARG00000011298 (2)
GENE EXPRESSION
All Expression Data: 3 figures from 2 publications
Wild-type Stages, Structures: Gastrula:75%-epiboly (8.0h-9.0h) to Pharyngula:Prim-5 (24.0h-30.0h)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa37731 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa43995 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH atf7a HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH atf7a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process regulation of transcription, DNA-templated (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 6)
    PROTEIN FAMILIES, DOMAINS AND SITES
    Type InterPro ID Name
    Domain IPR004827 Basic-leucine zipper domain
    Domain IPR013087 Zinc finger C2H2-type
    Family IPR016378 Transcription factor cyclic AMP-dependent, CRE-BP1-type
    Homologous_superfamily IPR036236 Zinc finger C2H2 superfamily
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA atf7a-201 (1)    Ensembl 2383
    Select Tool
    Browsers: UCSC,  NCBI,  Ensembl,  ZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM atf7a No data available
    MARKER RELATIONSHIPS
    atf7a Contained in: [BAC] CH73-136C12 (1), DKEY-9P24 (1) (order this)
    atf7a Encodes: [cDNA] MGC:136234 (1), MGC:194836 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001030205 (1) 2423 bp
    Select Tool
    Genomic GenBank:CR376824 (1) 235026 bp Blast at MegaBLAST
    Polypeptide UniProtKB:B3DIE0 (1) 497 aa
    Select Tool
    Sequence Information (all 19)
    ORTHOLOGY for atf7a ( Chr: 23 )
    CITATIONS (20)