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ZIRC
ZFIN ID: ZDB-GENE-050522-61
Gene Name: serine palmitoyltransferase, long chain base subunit 1
Gene Symbol: sptlc1
Sequence Ontology ID : SO:0000704

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Previous Names: fc75h04, fp41c08, wu:fc75h04, wu:fp41c08, zgc:112247 (1)

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(Including Attributions)
Location: Chr: 10 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have catalytic activity and pyridoxal phosphate binding activity. Predicted to be involved in biosynthetic process. Predicted to localize to the integral component of membrane. Human  ...
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:7165371]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa12144 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa34823 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH sptlc1 HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    hereditary sensory and autonomic neuropathy type 1A Neuropathy, hereditary sensory and autonomic, type IA 162400
    DISEASE ASSOCIATED WITH sptlc1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process biosynthetic process (more)
    Cellular Component integral component of membrane (more)
    Molecular Function catalytic activity (more)
    GO Terms (all 5)
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA sptlc1-202 (1) 2109
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM sptlc1 No data available
    MARKER RELATIONSHIPS
    sptlc1Contained in: [BAC] CH211-67C21 (1) (order this)
    sptlc1Encodes: [EST] fc75h04, fp41c08, IMAGE:7165371 (1) (order this)
    [cDNA] MGC:112247 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001020471 (1) 2105bp
    Genomic GenBank:CR352227 (1) 168407bp
    Select Tool
    Polypeptide UniProtKB:A0A0R4IPN2 (1) 498aa
    Sequence Clusters UniGene:45814 (1)
    Sequence Information (all 15)
    ORTHOLOGY for sptlc1 (Chr: 10)
    CITATIONS (18)