ZFIN ID: ZDB-GENE-050522-523
Gene Name: CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1
Gene Symbol: ctdsp1
Sequence Ontology ID : SO:0000704

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Previous Names: fj83f12, im:7141428, wu:fj83f12, zgc:113169

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(Including Attributions)
Location: Chr: 9 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have RNA polymerase II CTD heptapeptide repeat phosphatase activity; orthologous to human CTDSP1 (CTD small phosphatase 1).
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:113169]
  1 figure (1 image) from Thisse et al., 2004 [IMAGE:7141428]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa18259 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH ctdsp1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH ctdsp1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process regulation of transcription by RNA polymerase II (more)
    Molecular Function phosphatase activity (more)
    GO Terms (all 4)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR004274 (1)
  • InterPro:IPR011948 (1)
  • InterPro:IPR023214 (1)
  • InterPro:IPR036412 (1)
  • InterPro:IPR040078 (1)
  • PROSITE:PS50969 (1)
  • Pfam:PF03031 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA ctdsp1-001 (1) 2942
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM ctdsp1 No data available
    MARKER RELATIONSHIPS
    ctdsp1Contained in: [BAC] CH211-247B3 (1) (order this)
    ctdsp1Encodes: [EST] fj83f12, IMAGE:7141428 (1) (order this)
    [cDNA] MGC:113169 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_009304902 (1)
    Genomic GenBank:BX322540 (1) 156150bp
    Select Tool
    Polypeptide UniProtKB:B0S5V5 (1) 265aa
    Sequence Clusters UniGene:5370 (1)
    Sequence Information (all 20)
    OTHER ctdsp1 GENE PAGES
  • Alliance (1)
  • Gene:553744 (1)
  • VEGA:OTTDARG00000021622 (1)
  • Ensembl(GRCz11):ENSDARG00000040674 (2)
  • ORTHOLOGY for ctdsp1 (Chr: 9)
    CITATIONS (19)