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General Information
ZIRC
ZFIN ID: ZDB-GENE-050522-499
Gene Name: SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 a
Gene Symbol: smarcad1a
Sequence Ontology ID : SO:0000704

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Attributions

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Previous Names: smarcad1, wu:fi25c01, zgc:113183

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(Including Attributions)
Location: Chr: 8 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to be involved in ATP-dependent chromatin remodeling and DNA double-strand break processing. Predicted to localize to the site of double-strand break. Orthologous to human SMARCAD1  ...
GENE EXPRESSION
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa1299 Point Mutation Unknown Missense, Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa11941 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa12057 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa16448 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa18922 Point Mutation Unknown Premature Stop ENU
    sa18923 Point Mutation Unknown Premature Stop ENU
    sa38698 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa41231 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH smarcad1a HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    Basan syndrome 129200
    Basan syndrome 129200
    Adermatoglyphia 136000
    Huriez syndrome 181600
    Huriez syndrome 181600
    DISEASE ASSOCIATED WITH smarcad1a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process ATP-dependent chromatin remodeling (more)
    Cellular Component site of double-strand break (more)
    Molecular Function chromatin binding (more)
    GO Terms (all 7)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR003892 (1)
  • InterPro:IPR009060 (1)
  • PROSITE:PS51140 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA smarcad1a-004 (1) 491
    smarcad1a-005 (1) 479
    mRNA smarcad1a-201 (1) 3644
    smarcad1a-202 (1) 600
    smarcad1a-203 (1) 2151
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM smarcad1a No data available
    MARKER RELATIONSHIPS
    smarcad1aContained in: [BAC] CH211-247L22 (1) (order this)
    smarcad1aEncodes: [EST] fi25c01
    [cDNA] MGC:113183 (1) (order this), MGC:173631 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001020774 (1) 3642bp
    Genomic GenBank:AL807792 (1) 160553bp
    Select Tool
    Polypeptide UniProtKB:B0R061 (1) 972aa
    Sequence Clusters UniGene:3950 (1)
    Sequence Information (all 25)
    ORTHOLOGY for smarcad1a (Chr: 8)
    CITATIONS (22)