ZFIN ID: ZDB-GENE-050522-362
Gene Name: exosome component 6
Gene Symbol: exosc6
Sequence Ontology ID : SO:0000704

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Previous Names: id:ibd1130, wu:fe17d05, zgc:110071, zgc:77314

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(Including Attributions)
Location: Chr: 7 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have RNA binding activity; predicted to be involved in RNA catabolic process, RNA metabolic process, and nuclear-transcribed mRNA catabolic process; predicted to localize to the  ...
GENE EXPRESSION
All Expression Data: 4 figures from 3 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:110071]
  2 figures (2 images) from Kudoh et al., 2001 [ibd1130]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTSNo data available
PHENOTYPE No data available
DISEASE ASSOCIATED WITH exosc6 HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH exosc6 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process rRNA processing (more)
Cellular Component exosome (RNase complex) (more)
Molecular Function RNA binding (more)
GO Terms (all 14)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001247 (1)
  • InterPro:IPR020568 (1)
  • InterPro:IPR027408 (1)
  • InterPro:IPR036345 (1)
  • Pfam:PF01138 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA exosc6-201 (1) 1227
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM exosc6 No data available
    MARKER RELATIONSHIPS
    exosc6Contained in: [BAC] DKEY-97O18 (1) (order this)
    exosc6Contains: [SNP] rs3728060 (1)
    exosc6Encodes: [EST] fe17d05 (1), ibd1130 (1) (order this), IMAGE:6966522 (1)
    [cDNA] MGC:77314 (1) (order this), MGC:110071 (1) (order this), MGC:191797 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001020486 (1) 1030bp
    Genomic GenBank:CR352249 (1) 180142bp
    Select Tool
    Polypeptide UniProtKB:B2GQ67 (1) 271aa
    Sequence Clusters UniGene:80144 (1)
    Sequence Information (all 22)
    OTHER exosc6 GENE PAGES
  • Alliance (1)
  • Gene:326786 (1)
  • VEGA:OTTDARG00000020157 (1)
  • ORTHOLOGY for exosc6 (Chr: 7)
    CITATIONS (22)