ZFIN ID: ZDB-GENE-050522-362
Gene Name: exosome component 6
Gene Symbol: exosc6    Nomenclature History

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Previous Names: id:ibd1130, wu:fe17d05, zgc:110071, zgc:77314

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 7 Mapping Details/Browsers
Description: Predicted to have RNA binding activity. Predicted to be involved in RNA metabolic process. Predicted to localize to cytoplasmic exosome (RNase complex); nuclear exosome (RNase complex); and nucleolus. Is expressed in forebrain; hindbrain; immature eye; midbrain; and optic tectum. Orthologous to human EXOSC6 (exosome component 6).
Genome Resources: Alliance (1),  Gene:326786 (1),  Ensembl(GRCz11):ENSDARG00000036060 (1)
GENE EXPRESSION
All Expression Data: 4 figures from 3 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:110071]
  2 figures (2 images) from Kudoh et al., 2001 [ibd1130]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
High Throughput Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS No data available
PHENOTYPE No data available
DISEASE ASSOCIATED WITH exosc6 HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH exosc6 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process rRNA processing (more)
Cellular Component exosome (RNase complex) (more)
Molecular Function RNA binding (more)
GO Terms (all 13)
PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA exosc6-201 (1)    Ensembl 1227
Browsers: UCSCNCBIEnsemblZFIN
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM exosc6 No data available
MARKER RELATIONSHIPS
exosc6 Contained in: [BAC] DKEY-97O18 (1) (order this)
exosc6 Contains: [SNP] rs3728060 (1)
exosc6 Encodes: [EST] fe17d05 (1), ibd1130 (1), IMAGE:6966522 (1)
[cDNA] MGC:77314 (1), MGC:110071 (1), MGC:191797 (1)
SEQUENCE INFORMATION
Type Accession # Length (nt/aa) Analysis
RNA RefSeq:NM_001020486 (1) 1030 nt
Genomic GenBank:CR352249 (1) 180142 nt
Select Tool
Polypeptide UniProtKB:B2GQ67 (1) 271 aa
Sequence Information (all 21)
ORTHOLOGY for exosc6 ( Chr: 7 )
CITATIONS (25)