ZFIN ID: ZDB-GENE-050522-297
Gene Name: nucleoporin 88
Gene Symbol: nup88
Sequence Ontology ID : SO:0000704

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Previous Names: ik:tdsubc_2f7, wu:fb16f10, wu:fb33e09, xx:tdsubc_2f7, zgc:112439

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(Including Attributions)
Location: Chr: 5 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
Directly Submitted Expression Data: 12 figures (10 images) from Rauch et al., 2003 [fb16f10]
Wild-type Stages, Structures: Segmentation:20-25 somites (19.0h-22.0h) to Hatching:Long-pec (48.0h-60.0h)
  brain, eye, immature eye, lens (all 10) expand
Curated Microarray Expression: GEO (1)
PHENOTYPE
Data: Fig. 1 from Busch-Nentwich et al., 2012
Observed in: eye, head, melanocyte, swim bladder (all 5) expand
DISEASE ASSOCIATED WITH nup88 HUMAN ORTHOLOGNo data available
GENE ONTOLOGY
Ontology GO Term
Biological Process mRNA export from nucleus (more)
Cellular Component nuclear pore (more)
Molecular Function transporter activity (more)
GO Terms (all 6)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR015943 (1)
  • InterPro:IPR019321 (1)
  • Pfam:PF10168 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA nup88-001 (1) 2410
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM nup88 No data available
    MARKER RELATIONSHIPS
    nup88Contained in: [BAC] CH211-284F22 (1) (order this)
    nup88Encodes: [EST] fb16f10 (1) (order this), fb33e09 (1), fe14e10 (1), tdsubc_2f7 (1)
    [cDNA] MGC:112439 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001020466 (1) 2422bp
    Genomic GenBank:CR450697 (1) 143752bp
    Select Tool
    Polypeptide UniProtKB:A2CEI4 (1) 720aa
    Sequence Clusters UniGene:4121 (1)
    Sequence Information (all 16)
    OTHER nup88 GENE PAGES
  • Gene:321744 (1)
  • VEGA:OTTDARG00000018696 (1)
  • Ensembl(GRCz10):ENSDARG00000003235 (1)
  • ORTHOLOGY for nup88 (Chr: 5)
    CITATIONS (18)