Research
General Information
ZIRC
ZFIN ID: ZDB-GENE-050522-297
Gene Name: nucleoporin 88
Gene Symbol: nup88
Previous Names: ik:tdsubc_2f7, wu:fb16f10, wu:fb33e09, xx:tdsubc_2f7, zgc:112439
Location: Chr: 5   Details
Nomenclature History
GENE EXPRESSION
Directly Submitted Expression Data: 12 figures (10 images) from Rauch et al., 2003 [fb16f10]
Wild-type Stages, Structures: Segmentation:20-25 somites (19.0h-22.0h) to Hatching:Long-pec (48.0h-60.0h)
  brain, eye, immature eye, lens (all 10) expand
Curated Microarray Expression: GEO (1)
MUTANTS AND TARGETED KNOCKDOWNS
Mutant lines: 1 genotype
Alleles: sa20552, sa20553, sa2206, sa9811
PHENOTYPE
Data: Fig. 1 from Busch-Nentwich et al., 2012
Observed in: eye, head, melanocyte, swim bladder (all 5) expand
GENE ONTOLOGY
Ontology GO Term
Biological Process biological_process (more)
GO Terms (all 1)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR019321 (1)
  • Pfam:PF10168 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA nup88-001 (1) 2410
    GENE PRODUCT DESCRIPTION
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM nup88 No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    nup88 Contained in: [BAC] CH211-284F22 (1) (order this)
    nup88 Encodes: [EST] fb16f10 (1), fb33e09 (1), fe14e10 (1), tdsubc_2f7 (1)
    [cDNA] MGC:112439 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001020466 (1) 2422 bp
    Genomic GenBank:CR450697 (1) 143752 bp
    Select Tool
    Polypeptide UniProtKB:A2CEI4 (1) 720 aa
    Sequence Clusters UniGene:4121 (1)
    Sequence Information (all 16)
    OTHER nup88 GENE PAGES
  • Gene:321744 (1)
  • VEGA:OTTDARG00000018696 (1)
  • Ensembl(Zv9):ENSDARG00000003235 (1)
  • ORTHOLOGY
      Evidence
    Species Symbol Chr (Position) Accession # AA CL
    Zebrafish nup88 5  
    Human NUP88 17 (17p13.2)
  • OMIM:602552
  • Gene:4927
  • Orthology Details
    CITATIONS (17)